Labrenzia sp. CP4: ACP90_12625
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Entry
ACP90_12625 CDS
T04295
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lap
Labrenzia sp. CP4
Pathway
lap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACP90_12625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lap03021
]
ACP90_12625
03400 DNA repair and recombination proteins [BR:
lap03400
]
ACP90_12625
Enzymes [BR:
lap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACP90_12625
Transcription machinery [BR:
lap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACP90_12625
DNA repair and recombination proteins [BR:
lap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACP90_12625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AMN53147
LinkDB
All DBs
Position
2714291..2718490
Genome browser
AA seq
1399 aa
AA seq
DB search
MNHEVMNLFNQQAPAQTFDNIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFENYVVLEPGLTPLKQHQLLSEEDFIAAQDEYGEDAFTA
MIGAEAIREILMSMDLERESEKLRQEIAEATTELKPKKLAKRLKVIEAFMESGNRPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILHPANGGPIIVPSQDIVLGLYYLSIMAEGEPGEGMVFGNTGEIHHALA
NKVITLHTKVKGRYRSIDAEGNPTSEIIETTPGRMLIAELLPKHHEVPFEVCNKLMTKKD
ISKMIDTVYRACGQKETVIFCDRIMQLGFKNACNAGISFGMDDMVIPDTKHKLVAETSSL
ATEYEQQYNDGLITQGEKYNKVVDAWAKCTDKIADEMMARIKAVQIDEETGRQKPMNSVY
MMSHSGARGSPQQMKQLAGMRGLMAKPDGSIIENPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIILEPDCGSTRGITVAPIVDAGNVIASLGMRVLGRT
TAEDVYNNQTGELLVPKGTLIDEKDVDAIEAAKVQQIKIRSVLTCETETGVCATCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNVDGTIKIRNRS
VNRDSDGNLIAMVRNMSIVVIDSDGNERAVHRVAYGSKLHVDEGDAVKRGQRIAEWDPYT
RPMLAEVDGIVDFEDLVDGASVQETADEATGITKRVVIDWRSSQRGQDLKPAIVVKDEKG
SISKTDRGSDARLMLSVDAVLSVQPGASVKAGDVLARIPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRFGRDYKNKRRVIIEPAEEGVEPVEYLIPKGKHFHLQEGDAIE
KGEYILDGNPAPHDILAVKGVEALAAYLVNEIQEVYRLQGVTINDKHIEVIVRQMLQKVE
ITDPGDTEFFSGEQIDKIDFEEANRRAIDNARDPAKGVPVLLGITKASLQTRSFFSAASF
QETTRVLTDAAVNGKTDPLVGLKENVIVGRLIPAGTGGVMKRIRQIATHRDDLIQEAQRQ
QSSDSAAEGLLEDMTGAAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgaggtcatgaacctgttcaatcagcaggctcccgcacagaccttcgacaat
atccggatttcgcttgcgagcccggaaaagatcttgtcctggtctttcggcgaaatcaaa
aagccggagaccatcaactaccgtacgttcaagcctgagcgcgacggtctgttctgcgcg
cgtatctttggcccgatcaaggactacgaatgtctttgcggcaaatacaagcgcatgaaa
tacaaaggcgtcatctgcgaaaagtgtggcgttgaagtcaccctgtcgcgggttcgccgt
gaacgcatgggccacatcgaactggctgcgcctgttgcgcacatctggttcctgaagtcc
ctgccgagccgtatcggccttctgctcgacatgacgctgaaggacctggaacgcgttctg
tatttcgagaactatgttgttctcgagccgggcctgaccccgctcaagcagcaccagctt
ctgtcggaagaagacttcatcgccgctcaggacgagtatggcgaagatgccttcaccgcc
atgatcggtgccgaggcgatccgcgagatcctgatgagcatggatctggagcgcgagagc
gagaagctgcgtcaggaaatcgccgaggcgaccaccgaactgaagccgaagaagcttgcc
aagcgcctgaaggtcatcgaagcattcatggaatcgggcaaccgcccggagtggatgatc
atgaccgtggttccggttatcccgccggatctgcgcccgctggtaccgcttgacggtggc
cgtttcgcgacgtccgatctgaacgatctctaccgccgcgtgatcaaccgtaacaaccgt
ctgcgccgcctgatggaactgcgtgctccggatatcatcatccggaacgaaaagcgcatg
cttcaggagtccgttgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgattc
cgtcagaacctgctcggcaagcgcgtcgactattccggtcgttcggttattaccgtgggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctattcgcgcctcgacgccaagggtttctcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaacgtccggaagtctgggacatcctcgacgaagtcatccgtgag
cacccggttctcctgaaccgcgcgccgacgctgcaccgtcttggtatccaggccttcgaa
ccgaccctgatcgaaggcaaggccatccagctgcatccgctcgtctgctcggccttcaac
gccgacttcgacggtgaccagatggctgttcacgtaccgctttctctggaagcccagctc
gaagcgcgtacgctgatgatgtcgaccaacaacattctgcatccggcaaacggtggcccg
atcatcgttccttcgcaggatatcgttctgggtctctactatctgtccatcatggcagaa
ggtgagccgggcgaaggcatggtcttcggcaacactggtgagatccatcatgcgctggcc
aacaaggtcatcacgctgcacaccaaggtgaaaggccggtatcggtccatcgatgcggaa
ggcaatccgacttccgaaatcatcgagaccactccgggccgcatgctcatcgcggagctt
ctgccgaagcaccacgaagtgccgttcgaggtctgcaacaagctgatgaccaagaaggac
atctccaagatgatcgacacggtttaccgtgcctgcggtcagaaggagacggttatcttc
tgtgaccggatcatgcagcttggtttcaagaacgcctgtaacgccggcatctccttcggc
atggacgacatggtcattccggacaccaagcacaagctggtggccgaaacctcgtcgctc
gcgaccgaatacgagcagcagtacaacgacggtctgatcacccagggcgaaaagtacaac
aaggttgtcgacgcctgggcgaaatgtaccgacaagattgctgacgagatgatggctcgc
atcaaggcggtccagatcgatgaggaaaccggtcgtcagaagccgatgaactcggtctac
atgatgtcgcactccggtgctcgtggttcgccccagcagatgaagcagctggccggcatg
cgcggcctgatggccaagccggacggttccatcatcgagaacccgatcatctcgaacttc
aaggaaggcctgtcggttctggagtacttcaactccacccacggtgcccgtaagggtctg
gccgataccgctctgaagaccgcaaactccggttacctgacccgccgcctggtggacgtc
gcccaggattccatcatcctggaaccggattgcggatcaacacgcggcatcaccgttgct
ccgatcgtcgatgccggtaacgtcatcgcttcgctcggcatgcgcgttctgggccgtacg
actgcggaagatgtctacaacaaccagaccggcgaactgcttgtccccaagggcacgctg
atcgacgagaaggatgttgatgccatcgaggctgccaaggttcagcagatcaagatccgc
tcggttcttacctgtgaaaccgaaaccggcgtctgcgcgacctgctatggtcgtgacctt
gctcgcggtacgcccgtgaacatgggtgaagctgtcggcgtcatcgccgcacagtcgatc
ggtgagcctggcacgcagctgaccatgcgtaccttccacattggtggtaccgcacaggtt
gtcgacagctcgttcatcgagtccaacgtcgacggcacgatcaagatccggaaccgttcg
gtcaatcgcgacagcgacggcaacctgattgccatggttcgcaacatgtccatcgttgtc
atcgacagcgacggcaacgagcgtgccgtgcatcgtgtggcctacggttccaagctgcat
gtcgatgaaggcgatgcggtcaagcgcggtcagcggattgccgaatgggatccgtatacc
cgtccgatgcttgctgaagtcgatggtatcgtggacttcgaggatctggtcgatggtgcg
tccgttcaggaaacggccgacgaagcgaccggcatcaccaagcgtgtcgtcattgactgg
cgttcttcgcagcgtggtcaggatctcaagccggctatcgtcgtcaaggacgaaaaaggc
agcatttccaagaccgatcgtggctccgatgcccgtctgatgctttccgttgacgcggtt
ttgtccgttcagccgggagcttcggtcaaggctggtgacgttctggcccgtattccgctg
gaaagtgccaagaccaaggacatcaccggtggtctgccgcgtgttgcggaactgttcgag
gctcgccgtccgaaggatcatgcgatcatcgccgaaatcgatggtacgatccgcttcggt
cgcgattacaagaacaagcgtcgcgtcatcatcgagccggcggaagaaggtgtcgagccc
gtcgaatacctcatcccgaaaggcaagcacttccatcttcaggaaggcgatgccattgaa
aagggtgagtacatcctcgacggcaacccggctccacacgacatcctggcagttaaaggc
gtggaggctcttgcggcttacctcgtcaacgagatccaggaagtctaccgcctgcagggc
gtgaccatcaacgacaagcacattgaagtgattgtccgccagatgctgcagaaggtcgag
atcaccgatccgggcgatacggagttcttctccggcgaacagatcgacaagatcgacttc
gaggaagccaaccgccgggcgatcgacaatgcacgcgatcctgccaagggggtgccggtt
ctgctcggcatcaccaaggcatcgctgcagacgcgttcgttcttctccgccgcctccttc
caggagacgacccgcgtccttaccgatgcggctgtcaacggcaagaccgacccgttggtc
ggcctcaaggagaacgtcatcgtcggccgtctgatcccggccggtaccggtggggtgatg
aagcggatccgtcagatcgcgacgcatcgcgacgacctgatccaggaagctcaacgtcag
cagtcttcggacagtgcagcggaaggccttctggaagatatgaccggtgcagccgagtaa
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integrated database retrieval system
