Lysobacter antibioticus ATCC 29479: GLA29479_1295
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Entry
GLA29479_1295 CDS
T04526
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GLA29479_1295 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_1295 (recB)
Enzymes [BR:
laq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GLA29479_1295 (recB)
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GLA29479_1295 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALN62179
LinkDB
All DBs
Position
complement(1383818..1387387)
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AA seq
1189 aa
AA seq
DB search
MNAVRDPFLELPLDGLRLIEASAGTGKTYTLATLVTRLVIERELRIGEILAVTFTDAATQ
ELRERLRRRLLLAARIAADDPALPRDGDDDERALTRSLVEAQAAQEGAAPLRARLARAAR
EIDLAAVVTIHGFCARVLAEHALETGQPFAAPEMIGSERELHDEIAVDLWRAFGSEATAA
ELLSLQWPGGPPSLAADLGPLLRTQQLLPPVPLQSDDPLPALQQAAQMLSAAFAEHGDEA
CARLDAAIAAKVLNGNSYRATLPRELWLLLSQWSAHGDAAQALDPRIERLTPATLAARTN
KGKEAATPSSPLFDAVAAYLDAAQLRAQWLAAQAVALVHQVREQAGKRLSELKRVRRVQS
FDDLIADVASALEGPHGDALAERLREQYAVALVDEFQDTDARQWRIFERVFGERALFLIG
DPKQAIYGFRGGDVHTYLMAAQRAEQAPPLDHNFRSRPSLLRALSALYAQAGETAFIDAR
IRFREVQPGGAVADADLQRHGATAPALTLRRLPAPDDGRKKPEWNAPESRELATRACVAA
IHAWLRDARDGRAEIAGRPVQPADIAVLVRSHDEAARIQQALIAAGIPAVAAGRRSLFAT
EQALDVLSLFDALLHPGDSGRLRAALATALIGLDASAIARLSEDEPWQRDWQMRALGWRE
RWQRHGPLALIADLCAEQAPRLLTLADGERRLTNLMQLGETLQEADTRSLGLHGLRDWLR
LRIAEADDSDEKQQLRLESDARRVQILTLHKSKGLEFGLVFLPFIAIGREPRGGRLCEYP
DPELGRVLQLQTEVVDPRAPDWDSARERAAIESRSEDARLLYVGLTRARHALWLASGPLY
LAPASPLLAMVADPDALAAGHAGEIVIDDGALEAAPAPLLPAASGAVPPARSARRNLARD
WWVYSFTQLTNEASGGDAPLVALDERGAEDEPETAPALLTPADARFSGSRFGNVVHDALE
RVDFGAWRDWTPGQAEPPGEGEVLASALRAEGYTEADIDEGLPVLASLVGLTLTAALPEG
ARLCEVPERERRAEMEFHFALESAPIDALLDAMHAHGWLRERQAFGLRRRLEGLMTGKID
LVYVHDGRYYVLDYKTNRLPAYDAAHVERAMDESEYTLQSLIYTIALHRWLRFRLGEDYD
YARDFGGVRYLFCRGLDPEDPAAGVYAHQPARALVDAVDALFAGRGGGA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgtgcgcgatcctttcctggaactgccgctcgacggcctgcgcctgatcgag
gccagcgccggcaccggcaagacctataccctggcgaccctggtcacgcgcctggtgatc
gaacgcgaactgcgcatcggcgagatcctcgcggtgaccttcaccgacgccgccacccag
gaactgcgcgagcgcctgcgccgccgtttgctgctggccgcgcgcatcgccgccgacgac
ccggccttgccgcgcgacggcgacgacgacgagcgcgcgctgacccgcagcctggtcgag
gcgcaggccgcgcaggaaggcgccgcgcccttgcgcgcgcgccttgcgcgtgcggcgcgc
gagatcgacctggccgcggtggtcaccatccacggcttctgcgcgcgggtcctggccgag
cacgcactcgaaaccggacagccgttcgcggcgccggagatgatcggcagcgaacgcgaa
ttgcacgacgagatcgccgtggacctgtggcgcgccttcggcagcgaggcgaccgcggcc
gaactgctgtcgttgcaatggccgggcggcccgccttcgctcgcggccgatctcggcccg
ttactgcgcacgcagcaactgttgccgccggtgccgttgcagtcggacgacccgttgccg
gcgttgcaacaggcggcgcaaatgctgagcgcggcgttcgccgaacacggcgatgaagcc
tgcgcgcggctcgatgccgcgatcgccgccaaggtgctcaacggcaacagttatcgcgcg
acgctgccgcgcgagttgtggctgctgctgagccagtggagcgcgcacggcgatgccgcc
caggcgctggacccgcggatcgaacggttgaccccggcgaccctggccgcgcgcaccaac
aagggcaaggaggcggcgacgccgtcctcgccgctgttcgacgccgtcgcggcttacctc
gacgccgcgcaactgcgcgcgcaatggctggccgcgcaggcggtggccctggtccaccaa
gtgcgcgagcaagccggcaagcggctgagcgaactcaagcgcgtgcgccgggtgcagagc
ttcgacgatctgatcgccgacgtcgccagcgccttggaagggccgcacggcgatgccttg
gccgaacgcttgcgcgaacagtacgcagtggccctggtcgatgaattccaggacaccgac
gcgcgccagtggcggatcttcgagcgcgtgttcggcgaacgcgcgctgttcctgatcggc
gaccccaagcaggcgatctatggcttccgcggcggcgacgtgcacacgtatctgatggcg
gcccagcgcgccgaacaggcgccgccgctggatcacaacttccgttcgcggccctccctg
ctgcgcgcgctctcggcgctgtatgcgcaggccggcgagacggccttcatcgatgcgcgc
atccgcttccgcgaggtccagcccggcggcgccgtcgccgatgccgacctgcaacgccac
ggcgcgaccgcgccggcgctgactttgcgccgcttgccggcacccgacgacggccgcaag
aaacccgaatggaatgcgccggaatcgcgcgagctcgccacccgcgcctgcgtcgccgcg
atccacgcctggctgcgcgatgcgcgcgacggccgcgccgagatcgccggccggccggtg
cagccggccgacatcgccgtgctggtgcgcagccacgacgaggccgcgcgcatccagcag
gccttgatcgcggccggcattcccgcggttgcggccggtcgccgcagcttgttcgcgacc
gagcaggccctggacgtgttgagcctgttcgacgccttgctgcaccccggcgacagcggc
cgcctgcgtgcggcgctcgcgaccgctttgatcggcctggacgccagcgcgatcgcgcgc
ttgtccgaggacgagccttggcaacgtgactggcagatgcgcgcgctgggctggcgcgag
cgatggcagcggcacgggccgctggccctgatcgccgacctgtgcgccgagcaggcgccg
cgcctgctgaccttggccgacggcgaacgccgcctgaccaacctgatgcaactcggcgaa
accctgcaggaagccgacacccgctcgctcggcctgcacggtctgcgcgattggctgcgc
ctgcgcatcgccgaggccgacgacagcgacgagaagcagcaactgcgtttggagtcggac
gcgcggcgggtgcagatcctgaccctgcacaagagcaagggcctggagttcggcctggtg
tttctgcccttcatcgcgatcggccgcgagccgcgcggcgggcgtttgtgcgagtacccc
gatccggagctgggccgggtgctgcaattgcagaccgaggtggtcgacccgcgcgcgccc
gactgggacagtgcgcgcgaacgcgccgcgatcgaatcgcgttcggaagacgcgcgtctg
ctctacgtcggcctgacccgcgcgcgccatgcgctgtggttggcgagcggtcccctgtac
ctggcgccggcctcgccgttgctggcgatggtggccgatcccgacgcgctcgccgccggc
catgccggcgagatcgtcatcgacgacggcgccctcgaagccgcgcccgcgccgctgttg
ccggccgcgtctggcgcggtgccgccggcgcgtagcgcgcgccgcaatctggcgcgcgac
tggtgggtctacagctttacccagctcaccaacgaggccagcggcggcgatgcgccgttg
gtagcgctggacgaacgcggcgccgaggacgaaccggagaccgcgccggccttgctcacg
cccgccgatgcgcgcttctccggcagccgcttcggtaacgtcgtccacgacgcgctcgaa
cgggtcgatttcggcgcctggcgcgattggacgccgggccaggccgagccgccgggcgag
ggcgaggtgctggcgtcggccttgcgcgccgaaggctataccgaggccgacatcgacgaa
ggcctgccggtgctggcctcgctggtcggcctgaccctgaccgccgcgctgcccgaaggc
gcgcgtctgtgtgaggtgcccgagcgcgaacgccgcgctgagatggagttccacttcgcc
ctcgaatcggcgccgatcgacgctttgctcgatgccatgcatgcgcacggttggctgcgc
gagcgccaggccttcggtctgcggcgccggctcgaaggcctgatgaccggcaagatcgac
ctggtctacgtccacgatgggcgctattacgtgctcgattacaagaccaaccggctgccc
gcctacgacgccgcgcatgtcgagcgggcgatggacgaaagcgagtacaccctgcaatcg
ctgatctacaccatcgccttgcaccgctggttgcgcttccgcctgggcgaggactacgac
tacgcgcgcgacttcggcggcgtgcgctatctgttctgccgcggcctggatcccgaggat
ccggccgcaggcgtgtacgcgcaccagccggcgcgcgcgctggtcgatgcggtcgatgcc
ttgttcgcgggacgcgggggtggggcatga
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