Lysobacter antibioticus ATCC 29479: GLA29479_4260
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Entry
GLA29479_4260 CDS
T04526
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GLA29479_4260 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_4260 (uvrB)
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GLA29479_4260 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GLA29479_4260 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALN65098
UniProt:
A0A0S2F8K9
LinkDB
All DBs
Position
complement(4628347..4630377)
Genome browser
AA seq
676 aa
AA seq
DB search
MDDSAQSPGFQLVAPYSPAGDQPQAIERLIQGFDNGLAQQTLLGVTGSGKTYTVANVIQA
VQKPTLVMAPNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSV
NEHIEQMRLSATKALLERRDAIIVCTVSAIYGLGDPNEYFRMVLHMVRGERIDQRELIRR
LTEMQYTRNDTELRRATYRVRGEVIDVHPAESDSEALRVELFDGEIENLTLFDPLTGETL
SKVPRYTIYPGSHYVTTRRTVLDAIETIKDELRERLELLYAQNRLVEAQRLAQRTQFDLE
MLAEVGYCNGIENYSRHLSGHMPGEPPPCLFDYLPPDALLVIDESHVTIPQIGAMYKGDR
SRKETLVEFGFRLPSALDNRPLKFEEWEGRSPRSIFVSATPGPYELRKSEGQVTELVVRP
TGLIDPEVEIRPVATQVDDVLGEIRERVAMGDRVLITTLTKRMSENLTEYLAEHGVKVRY
LHSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSAGSL
IQTIGRAARNLRGKAILYADRVTNSMQKAIEETDRRRHKQVEYNTEHGITPKSVSKTIVD
VMEGARVDPDGLKARGKGRKVADEAADYAALSPSQFAARIKALEQQMYQHARDLEFEEAA
AVRDQLRRLKDAGFAA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggacgactccgcccagtcccccggtttccagctggtcgcgccttactcgcccgcgggc
gatcaaccgcaggccatcgagcgcctgatccaggggttcgacaacggcctggcccagcag
accctgctcggcgtgaccggttcgggcaagacctatacggtcgccaacgtgatccaggcg
gtgcagaagccgaccctggtgatggccccgaacaagaccctcgccgcgcagctgtacggc
gagttcaaggcgttcttcccgcataacgcggtcgagtacttcgtcagttattacgattat
taccagcccgaggcctacgtgccctcgagcgacaccttcatcgagaaggacagctcggtc
aacgagcacatcgagcagatgcgcctgtccgcgaccaaggccctgctcgaacgccgcgac
gcgatcatcgtctgcaccgtgtcggcgatctatggcctgggcgacccgaacgaatatttc
cgcatggtcctgcacatggtccggggcgagcgcatcgaccagcgcgagctgattcgacgc
ctgaccgaaatgcagtacacccgcaacgacaccgaactgcgtcgcgcgacctaccgcgtg
cgcggcgaggtcatcgacgtgcatccggccgaaagcgactcggaggccctgcgcgtcgag
ctgttcgacggcgagatcgagaacctgaccttgttcgacccgctgaccggcgaaaccttg
agcaaggtcccgcgttacacgatctatcccggttcgcattacgtgacgacccggcgcacg
gtgctcgatgcgatcgaaacgatcaaggacgaattgcgcgagcgcctggagctgctgtac
gcgcagaaccggctggtcgaagcccagcgcctggcccagcgcacccagttcgatctggag
atgctggccgaggtcggttattgcaacggcatcgagaactactcgcggcaccttagcggg
cacatgcccggcgaaccgccgccgtgcctgttcgactatctgccgccggacgctctgctg
gtcatcgacgaatctcacgtgaccattccgcagatcggcgccatgtacaagggcgaccgc
tcgcgcaaggaaaccctggtcgaattcggtttccgcctgccgtcggcgctcgacaaccgg
cccttgaagttcgaagagtgggagggtcgttcgccgcgctcgatcttcgtctcggcgacg
ccggggccgtacgaattgcgcaagtcggaagggcaggtgaccgagctggtggtgcgcccg
accggtctgatcgatcccgaggtcgagatccggccggtcgcgacccaggtcgacgacgtg
ctcggcgaaatccgcgaacgcgtcgccatgggcgaccgcgtgctgatcacgaccctgacc
aagcgcatgtcggaaaacctcaccgagtatctcgccgagcacggggtcaaggtgcgctac
ctgcactcggacatcgataccgtcgagcgcgtcgagatcatccgcgacctgcgcctgggc
aagttcgacgtgttggtcggcatcaatctgctgcgcgagggcctggacatgcccgaggtg
tcgctggtggcgatcctcgacgccgacaaggagggcttcctgcgttcggccggttcgctg
atccagaccatcgggcgcgccgcgcgcaacctgcgcggcaaggcgatcctgtacgccgac
cgcgtgaccaactccatgcagaaggcgatcgaggagaccgaccgccgccgtcacaagcag
gtcgaatacaacaccgaacacggcatcacccccaagtcggtcagcaagaccatcgtcgac
gtcatggaaggcgcgcgcgtcgatccggacggcctcaaggcccgcggcaaggggcgcaag
gtcgccgacgaggccgccgactatgccgcgctcagcccgtcccagttcgccgcccggatc
aaggccctggagcagcagatgtaccagcacgcccgcgacctggagttcgaggaggccgcg
gcggtgcgcgaccagttgcgccggctcaaggacgcggggttcgcggcctga
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