Loxodonta africana (African savanna elephant): 100656422
Help
Entry
100656422 CDS
T04351
Gene name
MMP1
Definition
(RefSeq) interstitial collagenase
KO
K01388
matrix metalloproteinase-1 (interstitial collagenase) [EC:
3.4.24.7
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03320
PPAR signaling pathway
lav04657
IL-17 signaling pathway
lav04926
Relaxin signaling pathway
lav05171
Coronavirus disease - COVID-19
lav05200
Pathways in cancer
lav05219
Bladder cancer
lav05323
Rheumatoid arthritis
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09150 Organismal Systems
09151 Immune system
04657 IL-17 signaling pathway
100656422 (MMP1)
09152 Endocrine system
03320 PPAR signaling pathway
100656422 (MMP1)
04926 Relaxin signaling pathway
100656422 (MMP1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100656422 (MMP1)
09162 Cancer: specific types
05219 Bladder cancer
100656422 (MMP1)
09163 Immune disease
05323 Rheumatoid arthritis
100656422 (MMP1)
09172 Infectious disease: viral
05171 Coronavirus disease - COVID-19
100656422 (MMP1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lav01002
]
100656422 (MMP1)
Enzymes [BR:
lav01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.7 interstitial collagenase
100656422 (MMP1)
Peptidases and inhibitors [BR:
lav01002
]
Metallo peptidases
Family M10
100656422 (MMP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_M10
Hemopexin
PG_binding_1
Reprolysin_5
Reprolysin_4
Reprolysin_3
DUF4953
Peptidase_M66
Peptidase_M54
Metallopep
Motif
Other DBs
NCBI-GeneID:
100656422
NCBI-ProteinID:
XP_010593727
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MASMPSLPLLLLLLWGMGSHGFPAASKTQEQDVEMVQKYLENYYNLKNDGDQIERQKKSS
PVVEKLKQMQEFFGLKITGKPDAETLNVMKQPRCGVPDMAQFVLTDGNPRWEKTHLTYRI
ENYTPDLPQADVDSAIEKAFQLWSDVTPLKFTKVFEDQADIMISFVWGDHRDNSPFDGPG
GNLAHAFQPGPGIGGDVHFDEDEGWTNNLRNYNLYRVAAHELGHSLGLSHSTDIGALMYP
NYFFTGDVQLSQDDVNGIQAIYGPSSNPNKPIAPQTPQACDSKLTFDAITTIRGEVMFFK
DKFYMRINPFYPEVELNFISVFWPHLPNTLEAAYEVANRDEIRFFKGSKYWAARGQNVLR
GYPKDIYTSFGFPKTVKNIDAAVSEEDTGKTYFFVANKYWRYDEYKRSMDAGYPKIIAHD
FPGIGHKVDAVFKKDGFFYFFQGTRQYKYDPKNRRILTLLKANSWFNC
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggccagcatgcccagccttcctctgctcctgctccttctctggggtatggggtctcat
ggtttcccagcggcttcaaaaacacaagagcaagatgtggagatggtccagaaatacctg
gaaaattactacaacctgaagaatgatggggatcaaattgaaaggcagaaaaagagcagc
ccagtcgttgaaaagctgaagcaaatgcaggaattctttgggctgaagattactgggaag
ccagatgctgaaaccctgaatgtgatgaagcagcccagatgcggggtgcccgatatggct
cagtttgtcctcaccgacgggaatcctcggtgggagaaaacacacctgacctacaggatt
gaaaattacacaccagatttgcctcaagcagatgtggacagtgcaattgagaaagccttt
caactctggagtgatgtcacacccctgaagttcaccaaagtctttgaggatcaagcagac
ataatgatatcctttgtttggggagatcatcgtgacaattctccctttgatggacctgga
ggaaatcttgctcatgcttttcaaccaggcccaggtatcggaggggatgttcattttgat
gaagatgaagggtggaccaacaatttaagaaattacaacttgtatcgtgttgcggctcat
gaattgggccattcccttggactgtctcattctactgatattggggctttaatgtaccca
aactacttcttcactggtgatgttcagctatctcaggatgacgtcaatggcatccaggcc
atctatggaccttcctcaaatcccaacaagccaatagccccacaaaccccacaagcatgc
gacagtaagcttacctttgatgctataactacgattcgaggagaagtgatgttctttaaa
gacaagttctacatgcgcataaatcccttctacccggaagttgagctcaatttcatttct
gttttctggccccatctgccaaatacacttgaagctgcttatgaagttgctaatagagat
gaaatccggtttttcaaaggtagtaagtactgggctgctcggggacagaatgtgctacgt
ggataccccaaggacatctacacatcctttggcttccctaaaactgtgaagaatattgat
gccgctgtttctgaagaagacactggaaaaacatacttctttgttgctaacaagtactgg
aggtatgatgaatataaacgatccatggatgcaggttatcccaaaataatagctcatgac
tttcctggaattggccacaaagttgatgctgttttcaagaaagatggatttttctatttc
ttccaaggaacgaggcaatacaaatatgatcctaaaaacaggcgaattttgactctcctg
aaagctaatagctggttcaactgctga
Loxodonta africana (African savanna elephant): 100659450
Help
Entry
100659450 CDS
T04351
Gene name
MMP2
Definition
(RefSeq) 72 kDa type IV collagenase
KO
K01398
matrix metalloproteinase-2 (gelatinase A) [EC:
3.4.24.24
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav01522
Endocrine resistance
lav04670
Leukocyte transendothelial migration
lav04912
GnRH signaling pathway
lav04915
Estrogen signaling pathway
lav04926
Relaxin signaling pathway
lav04933
AGE-RAGE signaling pathway in diabetic complications
lav05200
Pathways in cancer
lav05205
Proteoglycans in cancer
lav05219
Bladder cancer
lav05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
100659450 (MMP2)
09152 Endocrine system
04912 GnRH signaling pathway
100659450 (MMP2)
04915 Estrogen signaling pathway
100659450 (MMP2)
04926 Relaxin signaling pathway
100659450 (MMP2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100659450 (MMP2)
05205 Proteoglycans in cancer
100659450 (MMP2)
09162 Cancer: specific types
05219 Bladder cancer
100659450 (MMP2)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
100659450 (MMP2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100659450 (MMP2)
09176 Drug resistance: antineoplastic
01522 Endocrine resistance
100659450 (MMP2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lav01002
]
100659450 (MMP2)
Enzymes [BR:
lav01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.24 gelatinase A
100659450 (MMP2)
Peptidases and inhibitors [BR:
lav01002
]
Metallo peptidases
Family M10
100659450 (MMP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_M10
fn2
Hemopexin
PG_binding_1
Reprolysin_5
Reprolysin_3
Peptidase_M66
Reprolysin_4
Motif
Other DBs
NCBI-GeneID:
100659450
NCBI-ProteinID:
XP_003416360
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MMENLGARGALAGALRTLCVLGCLLGHAAAAPSPIIKFPGDVAPKTDKELAVQYLNTFYG
CPKESCNLFVLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKW
DKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHG
DGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLF
GGKEYTSCTDTGRSDGFLWCSTTYNFDKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQG
TSYNSCTTEGRTDGYRWCGTTDDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNK
HESCTSTGRNDGKMWCATTGNYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGA
LMAPIYTYTKNFRLSQDDIKGIQELYGGSPDAGTGTGPTPTLGPVTPEICKQDITFDGVA
QIRGEIFFFKDRFMWRTVTRRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKTVFFAGNE
YWVYSASTLERGYPKPLTSLGLPPDVQQVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMD
PGFPKLIADAWNAVPDNLDAVVDLQGGGHSYFFKEAYYLKLENQSLKVVKFGSIKSDWLG
C
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaacctaggggcccgaggcgcgcttgccggtgccctgcggacgctctgtgtc
ctaggctgcctgttgggccacgccgccgccgcgccgtcgcccatcatcaagttccccggt
gacgtcgcccccaaaacggacaaagagttggctgtgcaatacctgaacaccttctatggc
tgtcccaaagagagctgcaacctgtttgtgctgaaggacacgctgaagaagatgcagaag
ttctttggactgccccagacaggcgaacttgaccagagcaccattgagaccatgaggaaa
ccacgctgtggcaaccccgatgtagccaactacaacttcttcccccgcaagcccaagtgg
gacaaaaaccagatcacatacaggatcattggctacacacctgatctggaccctgagaca
gtggacgatgccttcgcccgagccttccaagtctggagtgacgtgaccccattgcggttt
tctcgcattcacgatggagaggctgacatcatgatcaactttggccgctgggagcatggc
gatgggtacccatttgacggcaaggacggactcctggcacacgccttcgccccaggccct
ggagttgggggagattcccactttgacgacgatgagctgtggaccctgggagaagggcag
gtggtccgtgtgaagtacgggaacgccgatggagaatactgcaagttcccattcctgttt
ggtggcaaggagtacaccagctgcactgacacgggccgcagtgacggcttcctctggtgt
tccaccacctacaacttcgacaaggacggcaagtacggcttctgtccccacgaagccctg
ttcaccatgggtggcaatgctgacggacagccctgcaagttcccgttccgcttccagggc
acgtcctacaacagctgcaccaccgagggccgcacggatggctaccgctggtgtggtacc
accgacgactacgaccgcgacaagaagtatggcttctgcccagagactgccatgtcaact
gtcggcgggaactcagaaggtgccccatgtgtcttccccttcaccttcctgggcaacaag
cacgagagctgcaccagcaccggacgcaatgacgggaagatgtggtgcgcaaccacgggc
aactacgatgatgaccgcaagtggggcttctgccccgaccaagggtacagcctgttcctc
gtggcagcccacgagtttggccatgcgatggggctggagcactcggaggaccctggagcc
ctgatggcgcccatttacacctacaccaagaacttccgcctgtcccaagatgacatcaag
ggcattcaagagctctatgggggctcccctgacgctggcactggcaccggccccaccccc
acgctgggacccgtcactcccgagatctgcaaacaggacattacctttgatggcgtcgct
cagatccgtggggaaatcttcttcttcaaggaccggttcatgtggcggacagtgacacgg
cgtgacaaacccatgggacccctgttggtggctacgttctggcctgagctcccggagaag
attgacgctgtgtacgaggccccgcaagaggagaagactgtgttttttgcagggaatgag
tactgggtctattcagccagcaccctggagcgcgggtaccccaagcctctgaccagcctg
gggctgccccctgacgtccaacaagtagatgctgcctttaactggagcaagaataagaag
acatacatctttgctggggacaagttctggaggtacaatgaagtgaagaagaaaatggat
cctggcttccccaagctcatcgcagatgcctggaacgctgtccctgataatctggacgcc
gttgtggacctgcagggtggtggtcacagctacttcttcaaggaagcatattacctgaag
ctggaaaaccaaagtttgaaggttgtcaagtttggaagcatcaaatcggactggctgggc
tgctga
Loxodonta africana (African savanna elephant): 100664260
Help
Entry
100664260 CDS
T04351
Gene name
MMP9
Definition
(RefSeq) LOW QUALITY PROTEIN: matrix metalloproteinase-9
KO
K01403
matrix metalloproteinase-9 (gelatinase B) [EC:
3.4.24.35
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav01522
Endocrine resistance
lav04657
IL-17 signaling pathway
lav04668
TNF signaling pathway
lav04670
Leukocyte transendothelial migration
lav04915
Estrogen signaling pathway
lav04926
Relaxin signaling pathway
lav05161
Hepatitis B
lav05200
Pathways in cancer
lav05202
Transcriptional misregulation in cancer
lav05205
Proteoglycans in cancer
lav05206
MicroRNAs in cancer
lav05215
Prostate cancer
lav05219
Bladder cancer
lav05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04668 TNF signaling pathway
100664260 (MMP9)
09150 Organismal Systems
09151 Immune system
04657 IL-17 signaling pathway
100664260 (MMP9)
04670 Leukocyte transendothelial migration
100664260 (MMP9)
09152 Endocrine system
04915 Estrogen signaling pathway
100664260 (MMP9)
04926 Relaxin signaling pathway
100664260 (MMP9)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100664260 (MMP9)
05202 Transcriptional misregulation in cancer
100664260 (MMP9)
05206 MicroRNAs in cancer
100664260 (MMP9)
05205 Proteoglycans in cancer
100664260 (MMP9)
09162 Cancer: specific types
05219 Bladder cancer
100664260 (MMP9)
05215 Prostate cancer
100664260 (MMP9)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
100664260 (MMP9)
09172 Infectious disease: viral
05161 Hepatitis B
100664260 (MMP9)
09176 Drug resistance: antineoplastic
01522 Endocrine resistance
100664260 (MMP9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lav01002
]
100664260 (MMP9)
Enzymes [BR:
lav01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.35 gelatinase B
100664260 (MMP9)
Peptidases and inhibitors [BR:
lav01002
]
Metallo peptidases
Family M10
100664260 (MMP9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_M10
fn2
Hemopexin
PG_binding_1
PT
Reprolysin_4
Reprolysin_3
Reprolysin_5
DUF4953
Motif
Other DBs
NCBI-GeneID:
100664260
NCBI-ProteinID:
XP_010590043
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MSPWQLLVLALLLLGGCSAAPRPHQPTFVVFPGDLRSNLTDMQLAEEYLYRYGYTRVAEM
NSKVSLGRALRLLQQNLALPETGELDSTTLDAMRAPRCGVPDMGGFQTFEGDLKWNHHNI
TYWIQNYSEDLPKQVIEDAFARAFAAWSEVTPLTFTRLRSEDVKDARDVDIVIRFGVKEH
GDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFT
FQGRSYTACTADGRSDGQLWCSTTADYDTDRQFGFCPSERLYTQHGNDNGKPCVFPFTFE
GRSYSACTTDGRSDGYRWCATTANYDQDKLYGFCPTRADSTVTGGNSPGELCTFPFVFLG
EEYTACTREGRRDGRLWCATTSNFDRDKKWGFCPDQGYSLFLVAAHEIGHALGLDHTSVP
EALMYPMYRFTEDPPLHEDDVKGIQHLYGPRPKPEPRPPTTTTAEPQPTDPPAICPTGPP
TVHPSERPTAGPTGPPSAGPTGPPSAGPTGPPTAGPTGPPTASPSTTSTVLLDPAEDACK
VNIFDAIAEIGDHLHFFKNGRYWRLSEGRGPRVQGPFLISDTWPALPLKLDSAFEDPLTK
KVFFFSGRQVWVYTGSSVLGPRRLDKLGLGPDVAEVTGALPRGGGKALLFSRQRFWRFDV
KTQTVEPRSVRSVDQVFPGVPLDTHDIFQYREKAYFCQDRFYWRVCFRNDNEVNQVDQVG
YVNFDILQCPEE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgagcccctggcagctcctggtcctggcgctcctgttgctgggcggctgttctgccgca
ccccgacctcaccaacccacctttgtggtcttcccaggagacctgagatccaatcttact
gacatgcagctggcagaggagtatctgtaccgctatggctacactcgtgtggcggagatg
aacagtaaggtgtccctgggtcgagcgctaaggcttctccagcaaaacctggccctgccc
gagaccggcgagctggacagcaccaccctggacgccatgcgagccccgcgctgcggcgtc
ccagacatgggtggcttccagaccttcgagggtgacctcaagtggaaccaccacaacatc
acatactggatccaaaactactcggaagacttgcccaaacaagtgatcgaagacgctttt
gcccgcgccttcgcggcgtggagcgaggtgacaccactcaccttcacccgcctgcgcagc
gaggatgtgaaggacgccagggacgtggacatcgtcatccggtttggggtcaaggagcac
ggagacgggtatcctttcgacgggaaggacgggctgctggcacacgcctttcctcccggc
cccggcattcagggagacgcgcacttcgacgatgacgaattgtggtcgttgggcaagggc
gtcgtggttcccacccgctttggaaacgcagatggcgccgcctgccactttcccttcacc
ttccagggccgctcgtacactgcctgcaccgccgacggccgctccgacggccagctctgg
tgcagcaccacggccgactatgacaccgaccgccagtttggcttctgccccagtgagagg
ctctacacccagcacggcaatgacaacggcaagccctgcgtgtttccgttcacgttcgag
ggccgctcctactcggcctgcaccaccgacggccgctcggatggctaccgctggtgcgcc
accaccgccaactacgaccaggacaagctctatggcttctgtcccacccgagctgactct
acagtgaccgggggcaactcgccgggagagctgtgcaccttccccttcgttttcttgggc
gaggagtacacggcctgtaccagggagggccgcagagatgggcgcctctggtgtgccacc
acctcgaacttcgaccgtgacaagaaatggggcttctgtccagaccaaggatacagcctg
ttccttgtggcggcgcacgagatcggtcacgcgctgggcttagatcacacttcggtgccc
gaggcactcatgtaccccatgtaccgcttcaccgaagaccccccgctgcatgaggacgac
gtgaagggcatccagcatctgtatggtcctcgtccgaaacctgaaccacggcctccaacc
accaccactgctgaaccccaacccacagatcccccggctatctgccccacaggaccccca
actgtccacccctcagagcgtcccactgctggtcccaccggccccccttcggctggtccc
accggccccccttcagctggccccacaggtccccccactgctggccccacaggtcccccc
actgctagcccttctacgacctccactgtgcttttggatccagcagaagatgcatgcaaa
gtgaacatctttgacgccatcgcagagatcggagaccatctgcatttcttcaagaatggg
aggtactggcgactctctgagggcaggggccccagggtacagggccccttccttatctcg
gacacgtggcccgccctccctctgaagctggactctgcctttgaggacccgctcaccaag
aaggttttcttcttctctgggcgccaggtgtgggtgtacacgggctcgtcggtgctgggc
ccgaggcgcctggacaagctgggcctgggcccagatgtggctgaagtcaccggagccctt
ccgcgcggcgggggtaaggcgctgctgtttagtaggcagcgcttctggaggttcgacgtg
aagacgcagactgtggagccccggagcgtccgctcggtggaccaggtgttcccgggggtg
cccttggacacgcacgacatcttccagtaccgagagaaagcctacttctgccaggaccgc
ttctactggcgcgtgtgtttccggaatgataatgaagtgaaccaggtggaccaagtgggc
tacgtgaactttgacatcctgcagtgccctgaggagtag
DBGET
integrated database retrieval system
