KEGG   Loxodonta africana (African savanna elephant): 100663865Help
Entry
100663865         CDS       T04351                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lav  Loxodonta africana (African savanna elephant)
Pathway
lav03030  DNA replication
lav03410  Base excision repair
lav03420  Nucleotide excision repair
lav03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lav00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    100663865 (LIG1)
   03410 Base excision repair
    100663865 (LIG1)
   03420 Nucleotide excision repair
    100663865 (LIG1)
   03430 Mismatch repair
    100663865 (LIG1)
Enzymes [BR:lav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100663865 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     100663865 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     100663865 (LIG1)
DNA replication proteins [BR:lav03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    100663865 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     100663865 (LIG1)
DNA repair and recombination proteins [BR:lav03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     100663865 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     100663865 (LIG1)
   MMR (mismatch exicision repair)
    Other MMR factors
     100663865 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 DDR
Motif
Other DBs
NCBI-GeneID: 100663865
NCBI-ProteinID: XP_003406544
LinkDB All DBs
Position
Unknown
AA seq 917 aa AA seqDB search
MQRSIMSFFQPKKEGKAKKPEKETSNSSRETEPPPKVALKERNGVVPESESPVKRLVRKA
ARVLSSEEEEEDSALTSLKGQKPAPGSPKASPPSPAASLESIPSPSEASPVEVSPSGIPK
RRTARKQLPKRKIQDVLEEQSGDKERETKRKKEEEEAETPAESVTEPEVAKKKEAEDEDQ
PRMSPKPCKTSEAETPAESTSEPAVGVKKEPQEGDQTKPSPRPSKRISSFFTPRKPATKK
EVKEEGSGAPGEEETKGPLDPADYNPAKNNYHPIEDACWKSGQKVPYLAVARTFEKVEEV
SARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQAT
GRQLESVRAEAAEKGDVGLVAESSRTTQRIMLPPPPLTASGVFAKFRDIARLAGSASTAK
KIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVD
AGKGRTAEARKMWLDEQGMVLKQTFCEVPDLDCIVPVLLEHGLEHLPEHCRLSPGIPLKP
MLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDII
DRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKDVDASEIQVQVCLYAFDL
IYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVRDSCEGL
MVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAT
YDKESEELQAICKLGTGFSDEELEKHHQSLQALVLPSPRSYVRADGAVAPDHWLEPSTVW
EVKCADLSLSPIYPAARGLVDREKGISLRFPRFIRIRDDKKPEEATTSAQVAQLYQAQSQ
IQNQKGASSESDLEDFY
NT seq 2754 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttccaacccaagaaggagggcaaagcaaagaagcca
gagaaagaaacctccaacagcagcagagagacggaacctcccccaaaagtggcgctgaag
gagcggaatggagtggtgcccgagagtgagtctccagtgaagagactggtgaggaaggca
gcccgggtcttgagcagtgaagaggaggaggaggacagtgctctcacctctctcaaaggc
cagaaacctgctccaggctctccgaaagcctcccctcccagtcctgctgcatctctggag
agcatcccttccccctccgaagccagtcccgtggaagtctccccatcagggattccgaag
cgtcgcacagctcggaagcagctcccgaaacggaaaattcaggatgtcctggaagaacag
agtggagacaaggaaagagagaccaagaggaagaaggaagaagaagaagcagagacccca
gcagaaagtgtcacagagcctgaagtggcaaaaaaaaaggaagcagaagatgaggaccag
cccaggatgtcacctaaaccctgcaagacttctgaagcagagaccccagcagaaagcact
tcagagcctgcagtgggcgtgaaaaaggagccacaggagggggaccagaccaagccttcc
cccaggccttctaagaggatcagcagtttcttcacccctcgaaagccagccacaaaaaaa
gaagtgaaagaagaggggtcaggtgctccaggagaagaggagacaaagggacccctggac
ccagccgactacaatcctgccaagaacaactaccaccctattgaagatgcctgctggaag
tctggccagaaggtcccctatctggctgtggcccggacctttgagaaggttgaggaggtc
tctgctcggctccggatggtggagacactgagcaacctgctgcgctccgtggtggccctg
tcacctccagacctcctccctgtcctctaccttagtctcaaccgccttgggccaccacag
cagggcctggagcttggcgtcggtgacggcgtccttctcaaggccgtggcccaggccaca
ggtcggcagctggagtccgtccgggccgaggcagccgagaagggtgacgtggggctcgta
gccgagagcagccgcaccactcagaggatcatgttgccccctcccccacttaccgcctct
ggggtcttcgccaagttccgtgacatcgcccgactggctggtagtgcttccacagccaag
aagatagacatcatcaaaggcctctttgttgcttgccgtcactcagaagcccgattcatc
gcccggtccctgagtggacggctgcgcctcgggctggctgagcagtcagtcctggctgcc
ctcgcccaggccgtgagcctcacaccccccggccaagaattccccccggctgtggtggat
gctgggaagggcaggacagcggaggccaggaagatgtggttggatgaacaaggcatggtc
ctgaagcagacgttctgtgaggtgcccgacctggactgcatcgtgccagtcctgctggag
cacggcttggagcatctaccagagcactgcaggctgagcccagggatccccctgaaacca
atgctggcccatcccacccggggtgtcagcgaagtcctaaagcgctttgaggaggcagct
ttcacctgcgaatacaaatacgatgggcagagggcacagatccatgttctggaaggcggg
gaggtgaagatcttcagccggaatcaggaggacaataccgggaagtaccctgatatcatc
gaccgcatccccaagatcaaactcccatcagtcacctccttcatcctggacactgaggcc
gtggcttgggaccgggaaaagaagcaaatccagccattccaagtgctcaccacccgcaaa
cgcaaggacgtggatgcatcagagatccaggtgcaggtgtgtttgtacgccttcgacctc
atctacctcaatggagagtcactggtacgggagcccctctcacgacgccggcagctgctc
cgggagaactttgtggagacagagggtgagtttgtcttcgccacctcgctggacaccaag
gacacagaccagatcgccgagttcttggagcagtcggtgagagactcgtgcgaggggctg
atggtgaaaaccctggatgtggatgctacctacgagatagccaagaggtcgcacaactgg
ctcaagctgaagaaggactacctcgagggagtgggcgacaccctggacctcgtggtgatc
ggtgcctacctgggccgggggaagcgtgctggccgctacgggggcttcctcctggccacc
tacgacaaggagagtgaggagcttcaagccatatgcaagcttggaacgggcttcagcgac
gaggagctggagaaacatcaccagagcctccaggccctggtgctgcccagccctcgctcc
tacgtgcgggccgatggggccgtggccccagaccactggctggagcccagcaccgtgtgg
gaggtgaagtgtgctgacctgtccctctcccccatctaccctgcggcccgtggtctggtg
gaccgtgagaagggcatttcccttcgcttccctcggtttattcgcattcgtgatgacaag
aagccagaggaagccaccaccagtgcccaggtggcccagctgtaccaggcgcagagtcag
atccagaaccagaaaggtgcgagctcggagtccgaccttgaggatttctactaa

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