Loxodonta africana (African savanna elephant): 100672780
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Entry
100672780 CDS
T04351
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
100672780 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lav04040
]
100672780 (SCN1A)
Ion channels [BR:
lav04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100672780 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
IQ
ATP-synt_B
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
100672780
NCBI-ProteinID:
XP_003405863
UniProt:
G3T4U8
LinkDB
All DBs
Position
Unknown
AA seq
2009 aa
AA seq
DB search
MEQTVLVPPGPDSFTFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIERNVTVDY
NGTLVNETVVEFDWKSYIQDSRYHYFLEGFLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQDAAQQAAAVTASEHSREPSAAGGLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSIFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAMFPVNGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTKHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKISSDCELPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGVAYVKRKIYEFIQQSFVRKQKILDEIKPLDDLNNKKESCMSNHTAEIGKDLDYLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVVEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYNCVNTT
TGEMFDISEVNNHSDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRDVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSEEMTNILSRINLVFIILFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKKEVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPD
CDPNKVNPGSSVRGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALDPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKIKGGANLLVKEDMIIDRINENSITEKTDLTMSTA
ACPPSYDRVTKPIIEKHEQEGKDEKAKGK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtacttgtaccaccaggacctgacagcttcaccttcttcaccagagaa
tctcttgcggctattgaaagacgcatcgcagaagaaaaggctaagaatcccaaaccagac
aagaaagatgatgatgaaaatggtccaaagccaaatagtgacttggaagctggaaagaac
cttccatttatttatggagacattcctccagggatggtgtcagagcccttggaggacctg
gacccatactatatcaataaaaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctctgccctgtacattttaactcccttcaaccctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttgacg
aactgcgtgtttatgacaatgagtaatcctcccgactggacaaagaatgtagagtacacc
ttcacaggaatatatacatttgaatcactcataaaaattattgcaaggggcttctgttta
gaagattttactttccttcgggacccatggaactggctcgatttcactgtcattacattt
gcatacgtgacagagtttgtggacctgggcaatgtctcagccttgagaacgttcagagtt
ctccgagcgttgaaaaccatttcagtcattccaggcctgaagaccattgtgggggccctg
atccagtccgtgaagaagctctcagatgtcatgatcctgactgtgttctgtctgagtgtg
tttgctctaattgggctgcagctattcatgggcaacctgaggaataaatgtgtacaatgg
cctcccaccaatgcttccctggaggaacatagtatagagaggaatgtaactgtggattac
aacggcacacttgtaaatgaaactgttgttgagtttgactggaaatcgtatattcaagat
tcacggtatcattatttcttggagggttttttagatgcactgctgtgtggaaacagctct
gatgcaggccaatgtccagaaggatacatgtgtgtgaaagctggtagaaaccccaattat
ggctatacaagcttcgatactttcagttgggcttttttggccctgtttcgactgatgact
caggacttctgggaaaatctttatcaactgacattacgtgctgctgggaaaacatacatg
atattttttgtgctggtcattttcttgggctcattctacctaataaatttgatcctggct
gtggtagccatggcctatgaggaacagaatcaggccaccttggaagaggcagagcagaaa
gaggccgaatttcagcagatgctcgaacaacttaaaaagcaacaggatgcagctcagcag
gcagcagctgtaactgcctcggagcattccagagaacccagtgcagcaggcggcctctct
gacagctcatccgaagcctcaaaattgagttccaagagtgctaaggaaagaagaaatcgg
aggaagaaaagaaaacagaaagagcagtctggcggggaagagaaagatgaggatgaattt
cagaaatccgaatctgaagacagcatcaggaggaaagggtttcgcttctccatcgaaggg
aaccgactgacgtatgaaaagaggtactcctccccacatcagtctttgttgagcatccgt
ggctctatattttctccaaggcgaaatagcagaacaagccttttcagctttagagggcga
gcaaaagatgtgggatctgagaatgactttgctgatgatgagcacagcacatttgaggat
aatgagagccggagagattctctgtttgtgccccggagacatggagagcgacgcaacagt
aatctaagtcagactagtaggtcgtctcggatgctggcaatgtttccagtgaatgggaag
atgcacagcactgtggattgcaacggtgtggtttctttggttggtggaccttcagttcct
acatcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaaccactgaaactgaaatgagaaagagaaggtcaagttctttccatgtttca
atggactttctagaagatccttcccaaaggcagagggcaatgagtatagccagcatttta
acaaacacagtagaagaacttgaagaatccaggcagaaatgccctccctgttggtataaa
ttttccaacatattcttaatctgggactgttcgccatattggttaaaagtgaaacatatt
gtcaacctggttgtgatggacccatttgttgacctggccattaccatctgtattgtctta
aatactcttttcatggccatggaacactatccgatgacaaaacatttcaatcatgtactt
acagtaggaaatttggtcttcactggaatctttacagcagaaatgtttctgaaaattatt
gccatggatccttactattatttccaagaaggttggaatatctttgatggtttcattgtg
acactaagcttggtagaacttggccttgccgatgtggaaggattatcagttctccgttca
ttcagattgctccgagtattcaaattggcaaaatcttggccaacattaaatatgctaata
aagatcattggtaattcagtgggggctttgggaaatctaaccctggtgttggccatcatc
gtcttcatttttgccgtggttggcatgcagctctttggtaagagctacaaagattgtgtc
tgcaagatctccagcgactgtgaactcccacgctggcacatgaatgacttcttccactcc
ttcctgattgtgttccgtgtgctgtgtggggagtggatagagaccatgtgggactgtatg
gaggtcgctggccaagccatgtgccttactgtcttcatgatggtcatggtcattggaaac
ctggtggtcctgaacctctttttggccttgcttctgagctcattcagtgcagacaacctt
gccgccacggacgatgataacgaaatgaacaatctccaaattgctgtggataggatgcac
aaaggagtagcttatgtgaaaagaaaaatatatgaatttattcagcagtcctttgttagg
aaacaaaagattttagatgagattaagccacttgatgatttaaacaacaagaaagagagc
tgtatgtccaatcatacagcagaaattgggaaagacctcgactatcttaaagatgtaaat
ggaactacaagcggcataggaactggcagcagtgtggaaaaatacattatcgatgaaagt
gattacatgtcattcataaacaatcccagtcttactgtgactgtaccaattgctgttgga
gagtctgactttgaaaacttaaacacggaggacttcagtagtgagtcagacctggaagaa
agcaaagagaaacttaacgaaagcagtagctcgtcggaaggcagcaccgtagacatcggt
gcgcctgcagaagaacagcctgtagtggaacctgaagaaacccttgagcctgaagcctgt
ttcactgaaggctgtgtgcaaagattcaaatgttgtcaaatcagtgtggaagaagggaga
ggaaaacaatggtggaacctgagaagaacatgtttccgaattgttgaacataactggttt
gagaccttcattgttttcatgattctccttagtagtggagctctggcatttgaagacata
tatattgatcagcgaaagacaattaagactatgttggaatatgctgacaaggttttcact
tatattttcattctggaaatgcttctaaaatgggtagcatatggctatcaaacgtatttc
accaatgcttggtgttggctcgacttcttaattgttgatgtttcattggtcagtttaaca
gcaaatgccttgggctactcagaacttggtgccatcaaatctctcaggacactaagagct
ctgaggcctctaagagccttatcacggtttgaagggatgagggtggttgtgaatgccctt
ttaggagcaattccatccatcatgaatgtgcttctggtttgtctcatattctggctaatt
ttcagcattatgggcgtaaatttgtttgctggcaaattctacaactgtgttaacaccaca
actggtgaaatgtttgacatctccgaagtgaataatcattctgattgcctaaaactcata
gagagaaatgaaactgcccgatggaaaaacgtgaaagtgaactttgataatgtaggattt
gggtatctctctttgctccaagttgccacatttaagggatggatggatataatgtacgca
gctgttgattccagagatgtggaactccagcctaagtatgaggaaagtctgtacatgtac
ctttactttgttattttcatcatctttggatccttcttcaccttgaacctgtttattggt
gtcatcatagataatttcaaccagcaaaaaaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgcaatgaaaaaattgggatcaaaaaagccacaa
aagccgatacctcgaccaggaaacaaatttcaaggaatggtctttgactttgtaaccaga
caagtttttgacataagcatcatgattctaatctgtctcaacatggtcactatgatggta
gaaacagatgaccagagtgaagaaatgactaatattttgtcacgcatcaacctggtattc
atcattctgttcactggagagtgtgtgctgaagctcatctccctccgccattattacttt
accataggctggaatatttttgattttgtggttgtaattctctccattgtaggtatgttt
ctggctgagctgatagaaaaatactttgtgtcccctaccctgttccgagtgatccgtctt
gccaggattggccgaatcctgcgtctgatcaaaggagcaaaggggatccgcactctgctc
tttgctttgatgatgtccctccctgcgttgtttaacatcggcctcctgctcttcctggtc
atgttcatctacgccatctttggaatgtccaactttgcttatgttaagaaagaagttgga
attgatgacatgttcaactttgaaacatttggcaatagcatgatctgcctgttccaaatt
accacctctgctggttgggatggactgttggcacctattcttaatagtggaccacctgac
tgtgaccctaataaagttaatcctggaagctcagttaggggagactgtggtaacccatct
gtggggattttcttctttgtcagctacatcatcatatcattcctggttgtggtgaacatg
tacatcgctgtcatcctggagaacttcagtgttgctaccgaagaaagtgcagagcccctg
agtgaggatgactttgagatgttctatgaggtttgggagaagtttgatcctgatgcgacc
cagttcatggaatttgaaaaactgtctcagtttgcagctgctcttgacccccctctcaat
ttgccacagccaaacaaactccagctcattgccatggacttacccatggtcagtggtgat
cgaatccactgtcttgacatcttatttgcttttacaaagcgggttctaggggagagtgga
gagatggatgctctccgaatacagatggaagaacgattcatggcttctaatccttccaag
gtctcctatcagccaattaccaccactttaaaacgaaaacaagaggaggtatctgctgtt
attattcagcgtgcttacaggcgccaccttttgaagcgaactgtaaaacaagcttcattt
acttacaataaaaataaaatcaaaggtggggctaatcttcttgtaaaagaagacatgata
attgacagaataaatgaaaactctattacagagaaaactgatctgaccatgtccacagct
gcttgtccaccctcttatgaccgggtgacaaagccaatcatagaaaaacatgagcaagaa
ggcaaagatgaaaaagccaaagggaaataa
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