Loxodonta africana (African savanna elephant): 100674942
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Entry
100674942 CDS
T04351
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03082
ATP-dependent chromatin remodeling
lav03250
Viral life cycle - HIV-1
lav04714
Thermogenesis
lav05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100674942 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100674942 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100674942 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100674942 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lav01009
]
100674942 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lav03021
]
100674942 (SMARCB1)
03036 Chromosome and associated proteins [BR:
lav03036
]
100674942 (SMARCB1)
Protein phosphatases and associated proteins [BR:
lav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100674942 (SMARCB1)
Transcription machinery [BR:
lav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100674942 (SMARCB1)
SWI/SNF complex
100674942 (SMARCB1)
Chromosome and associated proteins [BR:
lav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100674942 (SMARCB1)
PBAF complex
100674942 (SMARCB1)
SWI/SNF complex
100674942 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
100674942
NCBI-ProteinID:
XP_010597008
LinkDB
All DBs
Position
Unknown
AA seq
348 aa
AA seq
DB search
MFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVE
EILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMG
RDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEM
FSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVD
QFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVE
IAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgttccgaggttctctgtacaagagatacccctcactctggaggaggctagccactgtg
gaagagaggaagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaag
gatcacggctacacaacactggccaccagtgtgaccctgctgaaggcctctgaggtagag
gagatcctggatggcaatgacgagaagtacaaggctgtctctatcagcacggagccccct
acttacctcagggagcaaaaagccaaaaggaacagccagtgggtgcccaccctgcccaac
agctcccaccatctggatgccgtgccatgctccaccaccatcaacaggaaccgcatgggc
cgtgacaagaagaggaccttccctctctgctttgacgaccacgaccccgctgtcatccat
gagaatgcgtcccagcctgaggtgctggttcccatccgactggacatggagatcgatggg
cagaagctgcgggatgccttcacatggaacatgaatgagaagctgatgacccccgagatg
ttctcggagatcctctgtgatgacctggacttaaacccgctgacgtttgtgcccgccatt
gcctcagcgatccggcagcagatcgaatcctaccccacagacagcatcctggaggaccaa
tcagaccagcgtgtcatcatcaagctgaacatccacgtgggcaacatttccctggtggac
cagtttgagtgggacatgtcggagaaggagaattcacctgagaagtttgccctgaagctg
tgctcggagctggggctgggcggggagtttgtcaccaccatcgcctacagcatccgggga
cagctgagctggcaccagaagacctacgccttcagtgagaaccccctgcctacggtggag
atcgccatccgtaataccggcgatgctgaccagtggtgcccactgctggagaccttgacg
gacgccgagatggagaagaagatccgcgaccaggacaggaacacaaggcggatgcggcgt
ctcgccaatactgccccagcctggtaa
DBGET
integrated database retrieval system
