Loxodonta africana (African savanna elephant): 100675913
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Entry
100675913 CDS
T04351
Gene name
IFIH1
Definition
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
3.6.4.13
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04622
RIG-I-like receptor signaling pathway
lav05161
Hepatitis B
lav05162
Measles
lav05164
Influenza A
lav05168
Herpes simplex virus 1 infection
lav05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
100675913 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
100675913 (IFIH1)
05171 Coronavirus disease - COVID-19
100675913 (IFIH1)
05164 Influenza A
100675913 (IFIH1)
05162 Measles
100675913 (IFIH1)
05168 Herpes simplex virus 1 infection
100675913 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lav04054
]
100675913 (IFIH1)
Enzymes [BR:
lav01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
100675913 (IFIH1)
Pattern recognition receptors [BR:
lav04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
100675913 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
ResIII
Helicase_C
DEAD
CARD
SWI2_SNF2
AAA_22
AAA_19
DUF3638
Motif
Other DBs
NCBI-GeneID:
100675913
NCBI-ProteinID:
XP_003405875
LinkDB
All DBs
Position
Unknown
AA seq
1025 aa
AA seq
DB search
MSNGCSLDKSFRYLISCFRVRLKMYIQVEPVLDYLTFLPADLKEQIQKTAATTGNIHAVE
LLLSNLEKGSWPLGWTREFMEALQQAGNPLAARYMNPDLTDLPSPSSENAHDECLQLLNL
LQPTLVDKLLVRDVLDECVANNLLTTEDRSRISAAENHGNESGVRELLKRIVQKDNWFST
FLTILNQTGNNNLVLELTGTSSFESNAEIENLSQRNGPEPKEPLLPATDQPSSEYEHWDM
ENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENEMRRA
SPEPELHLRSYQMEVAKPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKSSEPGKVI
VLVNKVPLVEQLFRKEFKPFLKKWYRTMGLSGDTQLKISFPEVVKSCDVIISTAQILENS
LLNSEKGEDAGVQLSDFSLIVIDECHHTNKEAVYNNIMRRYLEQKLKNNRLKKQNKPVIP
LPQILGLTASPGVGGARKQAKADEHILKICANLDASTIKTVKENVGELREHIKEPCKKFA
IADDTREDPFKEKLLEIMTKIQTFCQMNPMSDFGTQPYEQWAIQTEKKAAREGNRKDRVC
AEHLRKYNEALQINDTIRMIDAYNHLETFYNDEKDKKFAVLEDDSDESGDSGDDDGGKDE
DAEKKPLKLHGTDRFLMTLFFDNRRILKKLAENPQHENEKLEKLRNTIMEQYTRTEGSAR
GIIFTKTRQSAFALSQWITENDKFAEVGVKAHHLIGAGHSSEFTHMTQNEQKEVISKFRT
GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYILVAPSSSGV
VEREIVNDFREKMMYKAIDRVQNMKPEDYDHKILELQMQSIMEKKMKIKRSITKHYRDNP
SLITFLCKNCSVLVCSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKFADYQTNGEI
ICKCGQAWGTMMVHKGLDLPCLKIKNFVVVFKNKAPKKQYKKWVELPITFPDLDYSECCL
FSDED
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgggtgttccttagacaagagtttccggtatctcatctcgtgcttcagggtc
agactgaaaatgtacatccaggtggagccagtgctggactacctgacattcctgccagca
gaccttaaggagcagattcagaagacggctgccaccaccgggaacatacacgcagttgaa
ctgcttttgagcaacttggagaaggggtcctggcccctgggctggactagggaatttatg
gaggccctccagcaagcgggcaaccctttagccgcccgctacatgaaccctgacctcacc
gatctgccctcgccgtcatctgagaacgctcacgatgagtgtctccaactgctgaacctc
cttcagcccactctggtggacaagcttctggttagagatgtactggatgaatgcgtggca
aataacctgttgacaactgaagacagaagtaggatttctgctgcagaaaaccatggaaat
gaatcaggtgtaagggagctactgaaaaggatcgtgcagaaagacaactggttttctaca
tttctgacgattctgaatcaaacaggaaacaacaaccttgtcctagagttaacaggcacc
agtagctttgaaagcaatgcagagattgagaatttatcacagagaaatggtcctgaacct
aaagagccacttcttcctgccacagatcagccaagttccgagtacgagcactgggacatg
gagaataattcatcagaatcgtcttttgcagattcttctgtagtttcagaatcagacaca
agtttggcagaaggaagtgtcagctgcttagatgaaagtcttggacataacagcaacatg
ggcagtgattcaggcaccatgggaagtgattcagatgaagagaatgagatgagaagagca
tcccctgagcctgagctgcatctcaggtcttaccaaatggaagttgccaagccagcctta
gaagggaagaatatcatcatctgcctccctacagggagtgggaaaaccagagtggctgtg
tacattgccaaggatcacttggacaagaagaaaaaatcatctgaacctggaaaagttatc
gtccttgtcaataaggtacctttagttgaacaactattccgcaaagagttcaaaccattt
ttgaagaaatggtatcgtactatgggattaagtggtgatactcaactgaaaatatcattt
ccagaagttgtcaaatcctgcgatgttattatcagcacagctcaaattcttgaaaactcc
cttttaaattcagaaaaaggagaagatgctggtgtccagttgtcagacttttccctcatc
gtcattgatgaatgccatcacaccaacaaagaagcagtctataataacatcatgaggcgc
tatttggaacagaagttgaaaaataatagactcaaaaaacaaaacaaaccagtcattcct
ctacctcagatactaggattaactgcttcacctggtgttggaggggccagaaaacaagcc
aaagctgacgaacacattttaaaaatatgtgccaatcttgatgcatctaccattaaaact
gtgaaagaaaatgttggtgaactcagggaacacataaaggagccttgcaagaagtttgca
attgcagatgacaccagagaagacccatttaaagagaaacttttagaaataatgacaaag
attcaaactttttgccaaatgaatccaatgtcagattttggaacccaaccctatgaacaa
tgggccattcaaacggaaaaaaaagctgcaagagaaggaaatcgcaaagaccgtgtttgt
gcagagcatttgagaaagtacaatgaggccctacaaattaatgacacaatccgaatgatc
gacgcatataatcatcttgaaactttctataatgacgagaaagacaagaagtttgcagtc
ctagaagatgatagtgatgagagtggtgacagtggtgatgatgatggtggcaaagatgaa
gatgctgaaaagaagcctttgaaactgcatgggacagatagatttcttatgactttattt
tttgacaacaggagaatattgaaaaagttggctgaaaacccacaacatgaaaatgaaaaa
ctggagaaattaagaaacaccataatggaacaatatactaggactgagggatcagccagg
ggaatcatttttacaaaaacacgacagagtgcatttgccctttcccagtggatcactgaa
aacgacaaatttgcagaagtcggagtcaaagcccaccacctaattggagctggacacagc
agcgagttcacgcacatgacacagaatgaacaaaaagaagtcattagtaaatttcgcact
ggaaaaataaatctgcttatcgcgaccacagtggcagaagaaggtctggatatcaaagaa
tgcaatatcgtcatccgctatggtctcgtcactaacgaaatagccatggtccaggcccgt
ggtcgagcaagagctgatgaaagcacctacatccttgttgcccccagcagttcaggagtt
gttgaacgtgaaatagttaatgatttccgagagaaaatgatgtataaagctatagaccgt
gttcagaatatgaaaccagaggattatgatcataagattttggaattacagatgcaaagt
ataatggaaaaaaaaatgaaaatcaagagaagtatcacaaagcattacagggataatcca
tcattaataactttcctctgcaaaaactgcagcgtgctagtgtgctctggagaggacatt
cacgtaattgagaagatgcatcatgtcaatatgacaccggaattcaaggaactctacatt
gtgagagaaaacaaagcattgcaaaaaaagtttgccgactatcaaacaaatggtgagatt
atctgcaagtgtggccaagcttggggaacgatgatggtgcacaaaggtttagatttacct
tgtctgaagataaagaattttgtggtcgttttcaaaaacaaagcacctaagaaacaatac
aagaaatgggtagaattacctatcacatttcctgaccttgactattcagagtgttgtttg
ttcagcgatgaagattaa
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