Lonsdalea britannica: CKQ53_15865
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Entry
CKQ53_15865 CDS
T05623
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lbq
Lonsdalea britannica
Pathway
lbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ53_15865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbq03019
]
CKQ53_15865
Enzymes [BR:
lbq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKQ53_15865
Messenger RNA biogenesis [BR:
lbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKQ53_15865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXW88307
UniProt:
A0A1X3S1Q0
LinkDB
All DBs
Position
complement(3474801..3476162)
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AA seq
453 aa
AA seq
DB search
MSFESLGLSADILRAVEEQGYREPTPVQSQAIPLVLAGRDLMASAQTGTGKTAGFTLPLL
QMLSSKPMSKGRRPVRALILTPTRELAAQIGENVQSYSKYLSLRSLVVFGGVSINPQMMK
LRGGVDILVATPGRLLDLEHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLSKLPTRR
QNLMFSATFSDDIKGLANSLLNNPASVEVVRRNTPSELVTQHVHMVDKKRKRELLSQLIG
QNEWRQVLVFTRTKHGANHLAEQLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVA
TDIAARGLDIDHLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIE
RLLKREIPRMAVPGYEPDPTIKADPIQNGRQGGRGGRPSSAPRGGGGARQGNHRGGAGEG
GRPARQGAPRSGGGARDGQARRARPSHKPASKA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatctctcggcctgagcgccgatattttacgtgccgtggaagagcagggt
tatcgtgagccgacgccggtacagagtcaggcgatcccgctggtattggctggccgcgac
ctgatggcaagcgctcagaccggtacgggcaaaacggcgggctttacgttgccgctgctg
caaatgctcagttcgaagcctatgtcgaagggccgtcgcccggttcgtgcgctgatcctg
acgccgacccgtgaactggcggcgcagattggcgaaaacgtccagtcttacagtaagtac
ctgagcctgcgttcgctggtcgtgttcggcggcgtcagcatcaatccccagatgatgaaa
ttgcgcggcggcgtggatattctggtggcgaccccgggtcgactgctggatctggaacat
cagaatgcggtagacctgtctcaggtcgaggtgctggttctggatgaagccgaccgtatg
ctggatatgggctttatccatgacattcgtcgcgtgctgtcgaaattgccgacacgccgt
cagaacctgatgttctccgcgaccttctctgatgacatcaaagggttggccaactctctg
ctgaacaatccggcctccgtcgaagtggtgcgtcgcaacacgccgtcagaactggtgacg
cagcatgtgcacatggtcgacaaaaaacgcaaacgcgaactgctgtctcagctgattggt
caaaacgaatggcgtcaggtgctggtcttcacccggaccaaacacggtgctaaccatctg
gctgaacagctggaaaaagacggtatcaccgccgcggcgatccacggcaacaagagccag
ggcgcacgtacccgggcgctggccaacttcaaagacggttccattcgtgtgctggtggcg
accgatatcgcggcccgtggtctggatatcgaccatctgccgcacgtcgtgaactatgag
ctgccgaacgtaccggaagattacgttcaccgtatcggccgtaccggccgtgccgcctct
accggtgaagcgctgtcgctggtctgtgtcgatgagcacaaactgctgcgcgacatcgaa
cgtctgctgaagcgtgagatcccgcgtatggccgttccgggctacgaaccggacccgacg
attaaggccgatcctatccagaacggtcgtcagggtggccgtggcggtcgtccgtcatcg
gctcctcgtggcggcggcggtgcgcgtcagggtaatcaccgtggcggcgccggtgagggt
ggtcgtccggctcgtcagggcgcgcctcgctccggcggtggcgcgcgtgacggccaggct
cgtcgcgctcgtccgagccacaaaccggcgtccaaagcctag
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