Leadbetterella byssophila: Lbys_2498
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Entry
Lbys_2498 CDS
T01350
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lby
Leadbetterella byssophila
Pathway
lby03410
Base excision repair
lby03430
Mismatch repair
lby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Lbys_2498
03430 Mismatch repair
Lbys_2498
03440 Homologous recombination
Lbys_2498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lby03400
]
Lbys_2498
DNA repair and recombination proteins [BR:
lby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Lbys_2498
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Lbys_2498
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Lbys_2498
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADQ18162
UniProt:
E4RYC6
LinkDB
All DBs
Position
complement(2744759..2746462)
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AA seq
567 aa
AA seq
DB search
MQKHWSYKPLPEDGEVAELQQQLNVSSAMATLLWQRGIYTFDAAKHFFRPSLKDLHDPFL
MRDMDKAVDRVSAALNADEKILIYGDYDVDGTTAVAMVYGFLKKKHVNLLYYNPDRYTEG
YGVSKQGIDYAKEQGVSLIISLDCGIKSADKVAYARSLGIDFIICDHHEPGEELPEAVAV
LDPKRKDCIYPYKELTGNGVGFKLLSALCQTRGWEWAELEEYLDLCMVSIASDIVPITGE
NRILAFYGLQKLNASPRISLKALMNVAGTQGEMNIESVVFTIGPRINAAGRIRHARAAVE
LLLSEDEDEAMELAYAIQKHNTERKGLDARITEEALDLIKRDPWLYEEAWSTVLYKEDWH
KGVIGIVASRCIENFYRPTIIFTKAGEDYAAGSARSVAGFDLYGAIEACSEHLIQFGGHM
HAAGMTISIDKIEDFRKAFDGEVKARLLEEQRIPVITVDLEVHLSELTPKFHKVMKQMSP
FGPENMQPIFVSHNLRARTAQVLKEKHLKLEVVQDGFSFPAIGFGLAPEFYRELASGRPF
SMAYSLEENHFRGNTTQQLFIRDIKLA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagcattggtcatataagcctctacctgaagatggggaggtagctgaattacag
cagcaactgaatgtttcttctgccatggccaccttgctatggcagagaggcatttatact
ttcgatgcggctaagcatttctttcgtcctagtctaaaagatcttcatgacccttttctc
atgagggatatggacaaggctgtagatagggttagcgccgcgttaaatgctgatgagaag
atcctgatctatggagattacgatgtagacggcaccacagcggtagccatggtgtatggc
tttttaaaaaagaagcatgttaatcttctctattataatccggacaggtatacggaaggt
tacggtgtctcaaagcaagggatagattatgccaaggaacagggagtaagtctgatcatc
agcttagactgtggtataaaatctgcagataaggtagcctatgcccgaagtttggggata
gattttatcatctgtgatcatcatgagccaggtgaagaactacctgaggcagtagcggtc
ttagatcccaaacgtaaagattgtatctacccttataaggaattgacaggtaatggagta
ggatttaagttgctttctgccttgtgccaaaccagagggtgggagtgggctgaactagag
gaatacttggacctatgtatggttagtatagcctcagatatagtacccattactggagaa
aaccggatattggctttctatggactacaaaaattaaacgcatcaccccgaatcagttta
aaggctttaatgaatgttgccggaactcaaggggagatgaatatagaatcagtggtattt
accattgggcctaggatcaatgctgcgggcaggattaggcatgctcgtgctgcggttgaa
ctcttgttgtcagaggatgaggatgaagccatggagctagcttacgccatccaaaagcac
aatacggaacgtaagggattagacgcccgtatcacggaagaagctttggacttgatcaag
agggatccttggctatatgaggaagcttggtctacggttttatacaaagaggactggcac
aagggggtgattggcatagtggcatcccgatgcatagaaaacttctatcgtcctaccatc
atattcactaaagcaggagaagattatgcggcagggtctgcacgctccgtagcaggcttt
gatctatacggtgctattgaggcatgctcagagcatttgattcaatttggggggcacatg
cacgctgcgggtatgaccatctctatagataagattgaagactttcggaaggcatttgac
ggagaggtcaaagcacgattactggaagagcagcgcattcctgtgatcacggtggattta
gaagttcatttatcagagttgacgccaaagtttcataaggtgatgaaacagatgtctcct
tttggccctgaaaatatgcaacccatctttgtttctcacaacttaagagcccggactgcg
caagtgctaaaagaaaagcatttaaagttagaagtagtacaagatggctttagttttccg
gccataggctttgggctggcaccagaattctatagggagctagcaagcggtaggcctttc
tctatggcgtactctctggaagaaaatcatttcaggggaaatactactcagcagttgttc
atccgcgacataaaattggcctag
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