Legionella clemsonensis: clem_11275
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Entry
clem_11275 CDS
T05016
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lcd
Legionella clemsonensis
Pathway
lcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
clem_11275 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcd03019
]
clem_11275 (rne)
03009 Ribosome biogenesis [BR:
lcd03009
]
clem_11275 (rne)
Enzymes [BR:
lcd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
clem_11275 (rne)
Messenger RNA biogenesis [BR:
lcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
clem_11275 (rne)
Ribosome biogenesis [BR:
lcd03009
]
Prokaryotic type
rRNA processing factors
clem_11275 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ASQ46798
UniProt:
A0A222P4M1
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All DBs
Position
2533168..2535087
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AA seq
639 aa
AA seq
DB search
MEKMLINATQTEEVRVALVKDNHLYDLDIECPSEVKKKGNIYKAVVTRREPSLDAVFVEY
GAKRQGFLPLKEIAPEYLSRHPDEFGDEKPPITSLIREGQELLIQVDKEERGNKGAALTT
YITLAGCYLVLMPNNPNSGGISRRIEGDDRDELKETLNALALPDDMGLIIRTAGVGKSQD
ELQADLDMLCNQWQAIKQAYNTQLAPCLIHQEGDVIIRSIRDNLRKSIGEIIIDDQVSYV
KAKQYIEQVKPDFLPNLKLYSSTVPLFNFYQIESQIEMAYHREVPLPSGGALVIDRTEAL
VSIDINSAKATSGSDIETTALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQRDV
ENRLKEALKADRARIQVGRISRFGLLEMSRQRLRLSLGENAQEVCPRCEGRGTVRNIQSH
GLSIIRLIEEEALKEKTAEVQVQLPPEMATFIMNEKREFIFHIEKRHSVQVLIIANPYLQ
PPHYEITRLKEDNVGKNKKPSYSLIQQPELAIVRAEDGTKLDEPAVKAFSLPSPVKAQHN
GFIKRLWNSLFGAGEPTVSSATRQEKVTRGSSHPQKQAQTERRQQGQGNRRRRPSGNQAR
NPNQQRKKSQGGQSSGRVVQMKPEQAKKKAPSNRDTQEQ
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatgttaataaatgcaactcaaactgaagaagttagggtcgcactggttaaa
gacaatcatctttatgatttagacattgaatgtccgtcagaagttaagaaaaaaggaaat
atttataaagcagtagttactcgacgagaacccagtctcgatgcagtattcgttgagtat
ggcgcgaaacgtcaggggtttttgccacttaaggaaattgctcctgagtatttaagcagg
catccagatgaattcggcgatgagaaacctccaattacttctctcattcgcgaagggcag
gaattacttattcaggtcgataaagaagagcggggtaataaaggtgcagccttaacaacc
tatattaccttagcgggctgttatttggtccttatgccgaataatcccaactctggcggc
atttctcggcgcatagaaggtgatgaccgggatgagttaaaagaaacgcttaatgcactg
gcgttacccgatgacatgggactaattattcgcaccgcaggcgtaggcaaaagccaggat
gagctccaggcagaccttgatatgctttgcaatcagtggcaagccattaaacaggcttat
aacacgcaacttgctccctgccttattcatcaggaaggcgatgtcattattcgctccatt
cgtgacaatctgcgtaaatcaattggtgaaattattattgatgatcaggtttcttatgta
aaagccaagcaatacattgagcaagttaaacctgattttttaccgaatcttaaactgtat
agcagcacggtccctctatttaatttttatcaaatcgaaagccagattgaaatggcctat
catcgagaagtgcctctcccttccggtggagcgcttgttatcgatcgaacagaagcatta
gtttctatcgacattaactcagcgaaggccaccagcggttcagatattgaaaccactgcg
ttaaatacgaatctggaagccgctgatgaaattgcacgtcaattgcgcctgcgcgatttg
ggaggtttggtcgttattgactttattgacatgagctcaagcaaaaatcaacgagacgtt
gaaaatcgtttgaaagaagcgttaaaggccgatcgggcacgcattcaagtcggtcgtatc
tctcgctttggcctgcttgaaatgtcccgccaacgtcttcgtctgtcgctgggagaaaat
gctcaggaagtctgtccacgctgcgagggcagaggcacggtaagaaatattcaatcgcat
gggttatccattattcgccttattgaggaagaagcacttaaagaaaaaactgctgaagtg
caagtgcaactaccacctgaaatggccacattcattatgaatgaaaagcgtgaatttatt
ttccacatcgaaaagcgccatagtgttcaggtactaattatagctaatccctatttacaa
ccgccacactatgaaattactcgcttaaaagaagataatgtcggcaaaaataaaaaaccg
agctattccttaattcagcagcctgaattggctattgttcgtgctgaagacggtaccaag
ctcgatgagccagcggtcaaagcgttctctttaccttcaccagtgaaggcacagcacaat
ggttttatcaagcgattatggaatagtttatttggcgctggagagcccaccgtatcctca
gcaactcgccaggaaaaagtaacgcggggaagctctcatccacaaaaacaggctcagacc
gagcgacgccagcagggccagggaaatagacgtcgacgtccaagtggtaatcaagcacgc
aatcccaatcagcagcgcaaaaaaagccagggaggacaatcaagcggccgagttgtccag
atgaagcctgaacaggcaaaaaaaaaagcgccgtccaatagggatacccaagaacagtga
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