Lates calcarifer (barramundi perch): 108875375
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Entry
108875375 CDS
T04895
Name
(RefSeq) bile acid receptor isoform X1
KO
K08537
farnesoid X receptor
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108875375
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108875375
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108875375
Nuclear receptors [BR:
lcf03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
108875375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
MRP-L28
Motif
Other DBs
NCBI-GeneID:
108875375
NCBI-ProteinID:
XP_018519781
UniProt:
A0A4W6EBC0
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Position
LG10:16035436..16046884
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AA seq
485 aa
AA seq
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MNEWVGPDINVVGPLQIPPSDEFSISESSHLFDILADHSSPLLQDPDILPYTSYPSMQYP
SMEPTMSSTPYYSSQNYYPQYNEDEWYTHTGIYELRKGPLEVSYDAEMEETSAVLPTVCK
RPRHMSQAGRVKGEELCVVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYKCKSGGNCE
MDMYMRRKCQECRLRKCKEMGMLAECLLTEIQCKSKRLRKNTKASPGQSTGDETEGADNT
DTKQVTSTTKPSKEKVEITKEQQALMRVIVEAYNRHQIPQDVAKKLLQEQYSAEENFLLL
TEMATSQVQVLVEFTKNIPGFLSLDHEDQIALLKGSAVEAMFLRSAQVFSRKMPNGHIEV
LEERIRKSGISEEFMTPMFNFYRSIGELHMVQEEQALLTAITILTPDRPYVKDQQAVERL
QEQMLDVLRKLCTLQHPQEPQYFARLLGRLTELRTLNHYHAEMLTSWRMNDHKFTPLLCE
IWDVQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtgggtgggccccgacatcaatgtggtgggaccgctgcaaatcccacccagc
gatgaattctccatctcagagagctcccacttgtttgatattctggcagatcacagcagt
cctcttctgcaggatcctgacatcttaccctacaccagctatcccagcatgcagtacccc
tccatggagccaaccatgtcttccacaccatactactctagtcagaactactaccctcag
tacaatgaagatgaatggtacacacacacggggatatatgaactgaggaaaggaccactg
gaggttagctacgatgctgagatggaggaaacgtctgctgtgctgcccactgtgtgcaag
agaccccggcacatgtcgcaagctggaagggtcaaaggggaagaactgtgtgttgtgtgt
ggagacaaggcctctggataccactataacgctctcacctgtgagggatgtaaaggtttc
ttcagacggagcataacaaagaatgctgtgtacaaatgcaagagtggtggaaactgtgag
atggacatgtatatgcgcaggaaatgtcaggagtgccggctaaggaagtgcaaagagatg
ggcatgctggctgagtgcctgctgacagagatccagtgtaaatctaagaggctacggaaa
aacaccaaggcctccccgggacagtcaaccggagatgagacagagggggcagacaacaca
gacaccaaacaggtcacctcaaccaccaaaccgtcaaaggaaaaagttgaaatcaccaaa
gagcagcaggcactcatgagagtcattgtggaagcatataacagacatcaaattcctcaa
gatgttgccaaaaaactgctgcaagaacagtacagtgcagaggaaaattttctcttgttg
acagaaatggcaactagtcaagttcaagtgctggtggagtttacaaaaaatattccaggc
tttctgtctctggaccatgaagaccagatcgcactgctcaagggttcggctgtggaggcc
atgttcctccgctcagctcaggttttcagcagaaagatgcccaacggacacatagaagtt
ttagaagagaggatacgcaagagtggtatatcagaggaattcatgacacccatgttcaac
ttttacagaagcattggtgagctccacatggtgcaggaggaacaggctctgctcacagcc
ataaccattttgacaccagatcgaccttatgtgaaggatcagcaggctgttgagaggctt
caggagcagatgctggatgtgctgaggaagctgtgcaccctacagcatccgcaggagccg
cagtacttcgctcgcctcctgggccgcctgacggagctgaggacgctcaaccattaccac
gcagagatgctcacatcctggagaatgaacgaccacaagttcaccccgctgctctgtgag
atctgggatgtgcagtga
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