Lates calcarifer (barramundi perch): 108877013
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Entry
108877013 CDS
T04895
Symbol
tent4b
Name
(RefSeq) terminal nucleotidyltransferase 4B
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108877013 (tent4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108877013 (tent4b)
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108877013 (tent4b)
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
108877013 (tent4b)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108877013 (tent4b)
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108877013 (tent4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_assoc
NTP_transf_2
Polbeta
PAP_NTPase
TUTase
Motif
Other DBs
NCBI-GeneID:
108877013
NCBI-ProteinID:
XP_018522432
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All DBs
Position
LG2:21181983..21203834
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AA seq
686 aa
AA seq
DB search
MDPRIAWFQPEQRGPANNLWMQIWETTQGLGYLHVNNSYTTGSQSTSSLKATVNGASGAV
LTSRNGALDSNTGSGEVRTQGMSTSMGDGGITEQRDFIPLETNSNHNNRAAGRGGVGGGG
QQQGSGVAVLWRGLTDGHPNKRKRDNKASTFGFNSSLLNSGSGSNTGSYDGYTGTPWKVR
NYSEGIVGLHEEINDFYEYISPRPEEEKMRLEVVDRIKGVIHDLWPSAEVQVFGSFSTGL
YLPTSDIDLVVFGKWETLPLWTLEEALRKRNVADENSIKVLDKATVPIIKLTDTFTEVKV
DISFNVKSGVKAARLIKEFKEKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAV
SFLQLHYREDVCRPIINIGVLLIEFFELYGRHFNYLKTGIRIKDGGCYVAKDEVQKNMMD
GYRPSMLYIEDPLQPDNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESIL
GRIIRVTQEVDEYREWIRKNWGSPSQNDLPLNRNDVTLYESQQLDECNNNVPDDDDEDVV
GVLPSAPHSKTSSNSSSPSPSLRSSPSSSLLSPSSTSSTSSSSDADSDGTPCKTAKQQSG
RSSSAHREKSATVSNHRTQSHTTSTPSGNNKGGKARMSRSHHKSGHHGQQSSSSSTKSHP
SNKPHHQGNSKKRKNVRDSTQDDLCR
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatccgagaatcgcctggtttcaaccagaacaacgtggacccgctaacaacctgtgg
atgcagatttgggagacgacacaggggctcggctacttgcatgtaaataacagctacacc
actggatctcagagcacgtcgagcctgaaagcgaccgtcaacggagcgtcgggagccgtc
ctcaccagcagaaacggggcacttgactccaacaccggcagcggtgaagtcaggactcag
gggatgtcgacctcaatgggggacggaggaataacggaacagcgggactttataccactg
gaaaccaatagcaaccacaacaaccgagcagctggcaggggcggtgtcggtggagggggg
cagcagcagggcagtggggtcgctgtgctttggagggggctgacggacggacaccccaac
aaaagaaaaagagataacaaagctagcactttcggattcaattccagcctcttgaacagt
ggcagcggctccaacacgggaagctatgatggttacacgggcacgccatggaaagtcagg
aactactcggaaggaattgtagggttacatgaggagatcaatgacttctacgagtacatc
tcgccacggccggaggaggagaagatgcggctggaggtggttgacagaatcaagggagtc
atccacgacctgtggcccagcgctgaggttcaagtgtttgggagcttcagcaccggcctt
tatctgccaacaagtgacattgacctggtcgtttttgggaagtgggagacgctaccactc
tggacactggaagaggctctgcggaagagaaatgttgcagatgagaactccatcaaagtt
ttggacaaggccacggttcccatcatcaaactgactgacaccttcactgaggtcaaagtg
gacatcagcttcaatgtgaagagtggcgttaaagctgctcggctcatcaaggagttcaaa
gagaaataccctgtgctgccttacctggtcctggtgctgaagcagttcctactgcagagg
gacctcaatgaggtttttactggtggaattggctcctacagtctgttcctcatggctgtc
agcttcctgcagcttcactacagggaagacgtgtgcagacccatcatcaacatcggtgtt
ctgctcattgagttctttgagctctacggtcgccacttcaactacctgaagacaggcatc
aggataaaagatggaggttgctatgttgccaaagatgaggttcagaagaacatgatggat
ggctacaggccctccatgctctacatagaggacccactgcaaccagacaacgatgttggc
cggagttcatacggtgccatgcaggtgaagcaggcatttgactacgcctacgttgtgctc
agccacgctgtgtcacccatcgccaagtactaccccaataacgagactgagagcatactt
ggcagaataattcgggtgactcaggaagtggatgaatacagggaatggatccgaaagaat
tgggggagcccgtcccagaatgatctgccactcaacagaaatgatgtcacactatacgag
tcccagcaactcgatgagtgcaacaacaacgtcccagatgatgatgacgaagatgttgtt
ggggttctaccgtcggccccccacagcaaaacctcctccaactcctcctctccatctccc
tcactgcgctcctctccttcctcctccctgctgtcaccttcttccacgtcctccacctcc
agctccagcgatgcggactctgatggcacgccgtgtaaaacagccaagcagcagtctggc
cggagctccagcgcccacagagaaaagtcagccaccgttagtaatcaccgaacacagagc
cacactaccagcactccatctggaaacaacaagggaggaaaggccaggatgtctcgttct
caccacaagagtggccaccacgggcagcagagctcctcatccagcaccaaaagtcacccg
agcaacaagccacaccaccagggcaacagcaagaagaggaaaaatgtacgagactctaca
caagacgacctctgcagatag
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