Lates calcarifer (barramundi perch): 108877283
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Entry
108877283 CDS
T04895
Symbol
si:dkey-110c1.10
Name
(RefSeq) LOW QUALITY PROTEIN: unconventional myosin-Va
KO
K10357
myosin V
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108877283 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108877283 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
lcf04131
]
108877283 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108877283 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108877283 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
108877283 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
108877283 (si:dkey-110c1.10)
Membrane trafficking [BR:
lcf04131
]
Others
Actin-binding proteins
Myosins
108877283 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
108877283 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
108877283 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
MnmE_helical
AAA_22
AAA_16
DUF1002
Motif
Other DBs
NCBI-GeneID:
108877283
NCBI-ProteinID:
XP_018522772
LinkDB
All DBs
Position
LG17:complement(9551957..9565029)
Genome browser
AA seq
1663 aa
AA seq
DB search
MATLELYSKGESVWIPDPGAVWVSAQLLQDYSPGEKHLLLQLPNGEEVHYPVGSPSDLPP
LGNPDILEGENDLTALSFLHEPAVLHNLRVRFLDYSSIYTYCGIVLVAINPYDQLPIYGE
EVIDAYSGQDMADMEPHIFSVAEEAYRTMTREEKNQSIIISGESGSGKTVSAKFTMRYFA
VVGGAAQQTSVEERVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFGRKGDIIGANMRT
YLLEKSRVVFQASAERNYHIFYQLCASRELPEMRSLKLDAPEHFRYTNQGGEMQIPGTDD
VSDLERTRNAFTILGVQPDQQLELFRILSAVLHLGNVNIQASGRSSDWSYIDADDRSLAV
FSKLLGVEGPQMAHWLCHRRLAVGGEMLVKPMSGQQAVEARDALAKHIYGQLFTWTVQRL
NSALRSQRGQTKSFIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFHLEQEEYV
REELAWSRIEFSDNQQCINLIEGQLGLFDLLDEECRMPKGSDDSWVRKLYNQHLTGKPHP
HFQKPRMSNSAFIILHFADTVQYECDGFLDKNRDTVFEELVNILKASQSELVAELFQQQE
NVSPVANGSVRSGKRATREHKLTVGFQFRQSLQMLMDTLNSTTPHYVRCIKPNDLKEPFM
FDPKRTVQQLRACGVLETIRISAAGYPSRWTYEEFFSRYRVLLRGPQSQEQAQASCRWTL
PQLISDPDQYCFGKTKVFFRAGQVALLERLRAERLRTAAVIIQSRVRGWLSRIRYTRILW
ATVTIQRYCRGALARRLALTLRYTKAALVIQKTYRMMVVRQLFLMIRQATITIQAFTRGT
LARHRYRLMVAERAAVLLQARVRGWLARRAYRRVRAAVVFMQCCVRRRAARRELLKLKTE
ARSVERYRELNKGMEVKLMQLQLRADQEARESTALRETLHAEREAAGAELEALRATIQRL
ESQRHEKPQPCPAISEEEEEKRRRAADKAAQEILQLTQELQALQREKESFCKEREDLAAR
FLEQEKAQEERVSQAVSQAAKALRTELDEERRKYQGLLREFTRLEQRYDNLREMSLLTER
TKGHRRTDSTQSLSFEPLSPLSTPTPLSPQSLTPLSLSPFPSAFPSPEEVRRXSVTSPCL
ERRVSVWSSETPMDQLMERMDVAKEPAVKMRGEDLAHAYDAVRVANKFLESQLRNQRSQW
EEELEALRCQLSQAISGSSPAAQQQELQELLEAREQECVKLRRELKELRNTVSLRRLLAQ
GFTPEISSCPPRPTPAAAVTGLLECRKRDETKLIKNLITDVRVDSALSLPPGLPAGVIFL
CVRQADCSGDQTRARSLCSAAVTAMKAALKKHSSDVDMTALWLKNACVLHDLLTQHSPKQ
TLESDELVPLTTDLSDLIRALSDLCIQGYQQLLSITETRLQNIIVAALLESETIPGLSGT
AVKLVMSRKRAGSDPRTVASGDAPTMASVLRELGALHTALSRQDLPSTLMEQAFHQLTYL
ISASALNSLLLRKDMCCWSRGMQIRYNVSLLEEWLRSRGLQTGGAVATLEPLIQAVQLLQ
AGKKTEAEAQALVQTCTALSSQQIVKILTLYTPHSDLDERVTLNFIRTVQGLLKGRSDCQ
PPQLLMDVRRVFPVTFPYLPPAVLHAEQLVIPDSLKISFLRRV
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atggcaacactggagctgtacagtaagggagaaagtgtgtggattcctgacccaggtgca
gtttgggtttcagcccaactcctccaggactacagtcctggagagaaacatctactgctt
cagctccctaatggagaggaggttcattaccctgtgggctctccctctgatctcccaccg
cttgggaaccccgatatcctggagggggaaaatgatctaacagctctcagcttcctccat
gaacctgctgtcttgcacaacctccgggttcgattcctggattacagcagcatctacacc
tactgcggtatcgttttagtggccatcaatccatatgaccagctccccatatatggagag
gaggtgatagatgcttacagtggtcaggacatggccgacatggaacctcacatcttttca
gtggcagaggaagcctaccgcactatgaccagggaggagaaaaaccagtctatcatcatc
agtggggagtctggctcagggaaaacggtctcagccaaattcaccatgcgatactttgct
gtggtcggaggagcggcacagcagaccagcgtggaggagagggttctggcttctaaccct
atcatggagtctattggaaatgccaaaaccactcgaaatgacaacagcagtcgttttggg
aaatacattgagataggctttggcagaaagggggacatcattggggcgaacatgagaacg
tatctcctggagaagtcgagggttgtcttccaggcatcagcagagagaaactaccatatc
ttctaccagttgtgtgcctccagagagctgcctgagatgagatccctcaaactggatgca
cctgagcatttccgctacaccaaccagggaggagagatgcagatacctggcactgatgat
gtgtctgacctggagcgcactcgcaatgcttttaccattctgggtgtgcagcctgaccaa
cagttggagctcttcaggatcctttcagctgttctacaccttggaaatgtcaacatccaa
gccagtggaagaagttctgattggagttatattgatgcagatgaccgctctctggctgtc
ttctccaagctactaggagttgagggacctcagatggctcactggctgtgtcatcgtagg
ttggccgtaggaggagagatgctggttaaacccatgtctggccagcaggctgtggaagcc
agagatgcgctggctaaacatatctacggtcagctgtttacatggaccgtccagaggctc
aactctgccctgcgcagccagaggggacagaccaaatcctttataggcgtgctggatatc
tatgggtttgagacctttgatcggaacagttttgagcagttctgtataaattatgcaaat
gaaaaactccagcagcagtttaacaggcatgtgttccacttggagcaggaggagtatgtc
cgggaggagctggcctggagcaggattgagttcagtgacaatcagcagtgcatcaatctc
atagaaggacaactaggcctgtttgatctgttagacgaggagtgcaggatgcctaaaggc
tcagatgatagctgggtgcggaaactgtacaaccaacacttgaccggcaagcctcaccct
cacttccagaaacctcgcatgtccaacagcgccttcattattctgcacttcgctgacaca
gttcaatatgaatgtgacggctttttggacaagaatcgagatactgtctttgaggagctc
gttaacattctgaaagcaagccagtctgagctggttgctgagttgttccagcagcaggag
aatgtgtctcctgtggccaatggaagtgttcgctcggggaagagagcaaccagagaacac
aaactgaccgtgggcttccagttccgtcagtcgttacagatgcttatggacaccctcaac
agcaccactcctcactacgtccgctgtattaaacccaatgacctcaaagagccttttatg
tttgaccccaagaggacagtgcaacagctgagagcctgtggggtgctggagactattcga
atcagtgctgcaggttatccatccaggtggacgtacgaggagttcttcagcaggtacaga
gttcttcttcgaggtccccagagtcaggagcaggcccaggcctcgtgcagatggaccctg
cctcagctcatctcagacccggaccagtactgctttggaaagaccaaagtgttcttccgg
gccggtcaggtggctctcctggagaggctgagagccgagaggcttcgcacggctgctgtg
atcatccagagtcgggtcagaggttggctgtcacggatcagatacaccaggatcctctgg
gcaactgttaccatacagagatactgcagaggagcactggccagacgacttgccctgacc
ctgcgctacaccaaggctgccttggtgatccagaagacctaccgcatgatggtggtgaga
cagttgtttctcatgatccgccaggccaccatcaccatccaggccttcaccaggggcaca
ctggcacgccacagatacagactgatggttgcagagcgtgctgccgtgttgctccaggcg
agagtgcgtgggtggttggcgaggcgggcgtacaggcgagtgcgtgcggccgtggtgttc
atgcagtgctgcgtgcgccgcagggctgccaggagagagctgctgaaactgaagaccgag
gcccgctccgtggagaggtacagagagctcaacaagggcatggaagtcaaactgatgcag
ctgcagttaagagccgaccaggaggccagagagagcaccgccttgagagagaccctgcat
gcggaacgagaggccgccggggctgagctggaggctctgagagcaaccatacagagactg
gagagccagagacatgagaaacctcagccatgcccagccatcagtgaggaggaggaggag
aaaaggaggagagctgcagacaaagctgctcaggagattcttcaactcacacaagagctg
caagccctgcagagagaaaaggagagtttttgcaaagagagagaggatctcgctgctcgc
ttccttgaacaagaaaaagcacaagaagagcgcgtgagtcaggctgtgtctcaggcggcc
aaagctctgaggacagagctggatgaagagaggagaaagtaccagggtctcctgagagag
ttcaccagactggagcagagatatgacaacctcagagagatgagtctgctcactgagcgc
accaagggccacagaaggaccgactccacccagagtctgagctttgagcctctctctccc
ttgtccacccctaccccgctgtcaccccagtctctcactccgctctctctctcacccttc
ccatctgccttcccttccccagaggaggtgcgcaggntcagcgtgacgtctccctgcctg
gagaggagagtctcagtgtggagctcagaaacaccaatggaccagctgatggagaggatg
gatgtggccaaagagccggcagtgaagatgagaggagaggacctggcacatgcctacgat
gctgtacgcgtggccaataagtttctggagagtcagctgcgtaaccagcgcagtcagtgg
gaggaggagctggaggctctgaggtgtcagctcagtcaagcgatctctggttcttcccct
gctgcacagcaacaggaactacaggaactgctggaggccagagagcaagagtgtgtcaaa
ttgaggagagagctgaaggagctcagaaacacagtctcgctgaggcgactcctcgctcaa
ggtttcaccccagagatctcatcctgtccgccccgaccaacaccagcagctgcagtcact
ggtttgctggaatgtaggaagagagatgaaactaagctcatcaagaacctcatcacagac
gttcgtgttgacagcgccctgtctctgcctcctggtctacctgccggcgtgattttcctg
tgcgtccgccaggccgactgcagcggggaccagactcgtgctcgctcgctctgtagtgct
gctgtcacagcaatgaaggcagctctgaagaaacatagcagcgatgtagatatgactgct
ctgtggctgaaaaacgcttgtgtgttgcacgacctcttgacccagcactccccaaaacag
acccttgaatcagatgagctggttccactgacgaccgacctgagtgacctgatacgtgcc
ctgagtgacctctgcatccagggctatcagcagcttctctccatcacagagacacgcctg
caaaacatcatagtcgctgccctgttggagtctgagaccatccccggtctgtctggcaca
gcagtgaagctggtaatgtccaggaagcgagcgggctcggaccccaggactgtcgcgagc
ggtgacgctcctaccatggcatcggtgttgagggagctgggggcccttcacactgccctc
tcccgtcaggatctgccctcgactctgatggagcaggccttccaccagctcacctacctc
atctctgcctccgctctcaacagcctgctgctgcggaaagacatgtgctgctggagtcgg
ggcatgcagatacgctacaatgtgagcctgttggaggagtggctgcgtagccgaggtctg
cagacagggggcgctgtggccacactggagcccctcatccaggcagttcagcttctgcag
gcagggaaaaaaactgaggcggaggcacaggccctggttcagacctgcactgctctgtcc
agccagcagattgtgaagattctgaccctctacaccccccacagtgaccttgatgaaaga
gtaacactgaatttcatccgtactgtccaggggcttctcaaaggccgctctgactgtcag
cctccacagctcctaatggatgtcaggcgagtgtttcctgtcacattcccctacttgccg
cctgctgtcctccatgcagagcagttagtcatcccagactctctcaagatctcctttcta
cgcagagtctag
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