Lates calcarifer (barramundi perch): 108879508
Help
Entry
108879508 CDS
T04895
Symbol
otud5a
Name
(RefSeq) OTU domain-containing protein 5-A isoform X1
KO
K12655
OTU domain-containing protein 5 [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
108879508 (otud5a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108879508 (otud5a)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108879508 (otud5a)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108879508 (otud5a)
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C85
108879508 (otud5a)
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
108879508 (otud5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OTU
Peptidase_C65
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
108879508
NCBI-ProteinID:
XP_018526298
LinkDB
All DBs
Position
LG6:complement(27378642..27401894)
Genome browser
AA seq
552 aa
AA seq
DB search
MTILPKKKPSSGVGVSDHADDSDRRSGSDPHQHPHPHAGRTGARPRASPPPWSYQPAPPS
ARDDRRSIEASSRPQQASPPPVGSVSPVGPGDGRDSSGGMVAGSRGELVVSAGVVGCGGG
IGSCCSGPGLSKRRRQAGTCSGGVVAALAGGGQPGVTGPGGVGSSQDTEEGAGNNSEDEY
ENAARLQSMDPATVEQQEHWFEKALREKKGFVIKKMKEDGACLFRAVADQVYGDQDMHEV
VRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYS
TEPINTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPAFKPGYAEQSLMKS
AIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLQDQEKQARQPRKASAT
CSSATAAASSGLDDWSARSPRQRDSDPSSHSDLTTAPSTNNNNKPPSPAGAALILSKPPS
PCAPGPSNQSRHHLEYRAIMQEMSPTAFGLTDWEDDEILASVLAVSQQEYLDSMKHQSAA
MHREREPSPDSS
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgacaattctcccgaagaagaagcccagctccggggtcggcgtctcggaccacgccgat
gacagcgaccgtcgcagcggctccgacccgcaccagcacccgcacccgcatgcggggcgg
accggagctcggccgagggcttcgcctccgccgtggtcctaccagcccgctccgccctcc
gccagggacgacaggcggagcatcgaggcgagctcccggccgcagcaggcctctccgccg
cccgtcggctccgtgtctccggtagggccgggagacggtcgggacagcagcggcgggatg
gtggccggatcccgcggggagctcgtcgtgtcggccggcgtcgtcggctgcggcggaggc
atcggcagctgctgctccgggcccggactgagcaagagacggcggcaggcaggcacctgc
tccggcggggtggtggcggctctggccggcggaggccagcccggggtgacggggccggga
ggagtggggtccagccaggacacggaggaaggagccgggaacaacagcgaggacgagtac
gagaacgccgcccggctgcagtccatggacccggctaccgtggaacagcaggagcactgg
tttgagaaagctctgcgggagaagaaaggcttcgtcatcaagaagatgaaggaggatgga
gcgtgtctgttcagagccgtggctgatcaggtgtatggagatcaagatatgcatgaagtg
gtccggaaacactgtatggattacctgatgaagaacgccgactatttctccaactacgtg
acagaggacttcaccacatacatcaacaggaagaggaaaaacaattgccacggcaaccac
atcgagatgcaggccatggccgagatgtacaacagaccggtggaggtgtaccagtacagc
acagagccaatcaacacgttccatggcatccaccagaacaacgacgagccaatcagagtg
agctaccaccgcaacatccactacaactcggtggtgaaccccaacaaggccacgatcggg
gtcggcctgggactgcctgccttcaaacccgggtacgcggagcagtctctgatgaaatcg
gccatcaagacgtcggaggagtcgtggatcgagcagcagatgttggaggacaagaagaga
gcgacggattgggaggccaccaacgaggccatcgaggagcaggtggcccgggagtcctac
ctgcagtggctgcaggaccaggagaaacaggcccgacagccccgtaaggccagcgccacc
tgcagctcggcgacggctgcagcctccagcggactggatgactggagtgccaggtcgcca
cggcaacgagactctgacccctcctcccactccgacctcacgactgcaccgtcaaccaac
aacaacaacaagcccccctcccccgccggagccgccctcatcctgagcaaacccccctcc
ccctgcgcgccaggtcccagtaatcagagtcgtcatcatttggagtacagagccatcatg
caggagatgtcacctacagcatttggtctgacagactgggaggacgatgagatcctggcg
tcggtgctggccgtctctcagcaggagtacctggacagcatgaaacaccagagcgccgcc
atgcatcgagagagagagccgtcacctgacagcagctga
DBGET
integrated database retrieval system
