Lates calcarifer (barramundi perch): 108880130
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Entry
108880130 CDS
T04895
Name
(RefSeq) rano class II histocompatibility antigen, A beta chain
KO
K06752
MHC class II antigen
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
lcf04514
Cell adhesion molecules
lcf04672
Intestinal immune network for IgA production
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108880130
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108880130
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
108880130
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108880130
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108880130
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108880130
Exosomal proteins of epithelial cells
108880130
Exosomal proteins of breast milk
108880130
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Gene cluster
GFIT
Motif
Pfam:
C1-set
C2-set_2
Ig_3
Ig_2
Motif
Other DBs
NCBI-GeneID:
108880130
NCBI-ProteinID:
XP_018527094
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Position
LG11:12168553..12170607
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AA seq
266 aa
AA seq
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MGIYCFLFCVVFSLFSPVFSDDDYAQFKACCTFKGPDFEDIEYIVTNHYNKKLMMEYNST
RGNWTGFTAYALLKAETFNGDLYDGLLRAFEKKILCIDNRKLVQTGVNRAAVTPTVKLNS
VKQPGGGHPAILVCSAYNFYPKQIQVTWLRNGQEVTSAVSSSDAMPDGDWYYQIHSYLEY
TPTPGETITCMVQHLTLSEPMLQVWDPFLLAAEQIKIVVGLCGLILGVVIVSSGFIYYKK
KSATYITPCQGGVWFPVEELPAAGAT
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgggaatttattgttttcttttttgtgtggttttctctcttttcagtccagttttctca
gatgatgattatgcacaattcaaagcatgttgtacattcaagggtccagactttgaagat
atagagtatattgttacgaatcactataacaagaaattgatgatggagtacaacagcaca
agaggcaactggacaggatttacagcctatgctttacttaaagcagaaacttttaatggt
gatctatatgatggactactgagggcatttgaaaagaagatactgtgtatagacaaccgc
aagcttgtccaaacaggagttaatcgtgcagctgttacacccactgtcaagctgaattca
gtgaagcagcctggtggtggacaccctgccattcttgtgtgcagtgcctataacttttat
cccaaacaaatccaagtgacatggttgcggaatgggcaggaagtgacctcagctgtcagt
tcctctgatgcaatgcctgatggggattggtactaccagattcattcttacctggagtac
accccaactccaggagaaacaattacctgcatggtccaacacctcactctctctgagcca
atgcttcaggtctgggatccgttccttctcgcggcagaacagattaaaattgttgtgggt
ctgtgtggactgatacttggtgttgttattgtaagctctggattcatctactacaagaaa
aagtctgccacatacattactccctgccaaggaggagtgtggtttcctgtggaagaactt
cctgcagctggagcaacttaa
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