Lates calcarifer (barramundi perch): 108880296
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Entry
108880296 CDS
T04895
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03320
PPAR signaling pathway
lcf04148
Efferocytosis
lcf04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108880296 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
108880296 (rxraa)
03320 PPAR signaling pathway
108880296 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108880296 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108880296 (rxraa)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
108880296 (rxraa)
Nuclear receptors [BR:
lcf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
108880296 (rxraa)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
108880296
NCBI-ProteinID:
XP_018527262
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Position
LG9:complement(4903695..5003848)
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AA seq
501 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAPPMQRGRSGEACSCFSGVCPLHQRRLSSDSSGQMTSSPLGS
PTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGMASPFSVISSPMGPHSMNSPGMGY
GPSVSPQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTALSLTKHICAICGDRSSGKH
YGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREVLL
HAAVQEERQRAKDKNENEVESTSCANEDMPVEKILEAEQAVEPKTETYIETNLGVPSNSP
NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVK
DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK
GLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQMT
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccattcttgtcattggggttcctgaagccccagtgctcgttggctcct
cccatgcagcgaggtcgctcaggcgaggcatgttcctgtttcagtggtgtgtgtcccctc
catcagcgtcgcctatcctcagactcttcaggccagatgacctcctcgcccttgggctca
cccacatcccaccggggaatgcacccgtctctgctcagcccaacgtccatgggaccctct
ggctctctccactctcccatcagcacgctgagttcacccatgaacggcatggcctcaccc
ttctctgtcataagctcacccatgggccctcactccatgaactcgccgggcatgggctat
ggccccagcgtcagtccccagctgaactctccgatgaactcagtcagcagcacggaggac
atcaagcccccgctgggcctcaacggtgtgatgaaggtgcctgcccagccctcaggcaca
gccctgtcactcaccaaacacatctgcgccatctgtggtgaccgctcctcaggtaaacac
tatggagtatacagctgtgagggctgcaaaggttttttcaaaaggacggtgcgcaaagac
ctgacctacacctgtcgtgacaacaaggactgtgtcatcgacaaacgccagaggaaccgc
tgccagtactgtcgctaccagaagtgtttagccatgggcatgaagagagaagttttgtta
catgcagccgttcaggaggagcgccagagagccaaggacaaaaatgagaacgaggtggag
tccaccagctgcgccaatgaggacatgcccgtggagaagatcctggaagccgagcaggcg
gtggaacccaaaacggagacctacattgagaccaaccttggtgtgccatctaactcgccc
aacgacccagtgacaaatatctgtcaggcggctgacaaacagctctttaccctggtggag
tgggctaagaggatcccccatttctctgagctgccgctggatgaccaggtcatccttcta
cgagcaggttggaatgagctcctcattgcatcattttcgcaccgttcgatagcggttaaa
gatgggatcctgttggcaactgggttgcatgtccaccgcaacagtgcccatagtgctgga
gtgggagccatttttgacagagtgctcacagaactggtgtctaagatgagggatatgcag
atggataagacagaactggggtgccttcgagctatcgtccttttcaaccctgattctaaa
ggtctatccaacccaggcgaggtagaagccctgagagagaaagtctatgcgtctttagag
gcctactgcaaacagaaataccccgagcagcctggcaggtttgccaagctgttgctgcgg
ttaccagcgctgcgctccattggcctcaagtgtctggagcacttgttcttcttcaaactc
atcggcgacacgcccatcgacacctttctcatggagatgctagaagctccgcatcaaatg
acataa
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