Lates calcarifer (barramundi perch): 108882341
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Entry
108882341 CDS
T04895
Name
(RefSeq) TATA box-binding protein-like 2 isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108882341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108882341
03021 Transcription machinery [BR:
lcf03021
]
108882341
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
108882341
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108882341
RNA polymerase III system
TFIIIB
108882341
RNA polymerase I system
SL1/TIF-1B
108882341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
108882341
NCBI-ProteinID:
XP_018530303
UniProt:
A0A4W6G6L4
LinkDB
All DBs
Position
Unknown
AA seq
344 aa
AA seq
DB search
MQLCSSAWTQVLEGPGRSWIRSAGSSLMDESALERYFDDSIANDSSFMLGEELGLQSPTS
SLQDSSYLSMKAGPSGDLGAELDLSFLPDDLSTQDDTAEAAQTQASVLDESQDSGVCLDY
NSQDSTAADPQQGMSSLGPGTGTSPFCPMTPMTPMTPMTPVTERSGIIPQLQNIVSTVNL
GCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAA
RKYARVVQKLGFPARFLDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYEPELFPGLIYR
MVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILRGFRKQ
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgtgcagctctgcctggacccaggtcctggaaggtcctggaaggtcctggatc
aggtcagctggttcttcactcatggatgagtcggcgttggagcgttactttgatgactcc
attgcaaatgactccagcttcatgttgggggaggagctgggcctccagagccccacctcc
tccctgcaggactcctcttacctgtcgatgaaggcgggtccgagcggagatctgggggcg
gagctggacctgagttttctacctgatgacctcagcacacaggatgacacagctgaagca
gcacagactcaggcctcagttctggacgagtctcaggacagcggcgtctgtctcgactac
aactcccaggattccacagcagctgacccccagcaggggatgtcttcattgggaccggga
actggcacctcccccttctgtcccatgacccctatgacccccatgacccccatgacccct
gtgacagagaggtcaggaatcatcccacagttacagaacatagtctccacagtgaacctg
ggttgtcctctggacctgaagttcatcgctctgcaggcgagaaacgcagaatacaacccc
aagcgttttgctgccgtcatcatgaggatccgtgaacctcgaaccacagctctgatcttc
agctcagggaagatggtctgtaccggagccaagagtgaggagcagtcgcggcttgcagcc
aggaagtacgcccgcgtggtgcagaaacttggtttccctgctcgcttcctggactttaag
atccagaacatggtggccagctgtgacgtctgtttccccatcagactagagggactggtc
ctgacccaccagcagttcagcagttatgaacctgagctgtttccaggtctcatctacagg
atggtgaaacctcggattgtcctgctcatctttgtgtctgggaaagttgttctgaccgga
gctaaagaacgagctgagatctatgaagcgttcgagaacatttatccgatcctgagaggc
ttcaggaaacagtga
DBGET
integrated database retrieval system
