Lates calcarifer (barramundi perch): 108882416
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Entry
108882416 CDS
T04895
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108882416
Enzymes [BR:
lcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108882416
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108882416
Prokaryotic type
tRNA splicing ligases
108882416
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
108882416
NCBI-ProteinID:
XP_018530422
UniProt:
A0A4W6F4G4
LinkDB
All DBs
Position
LG18:406137..409700
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AA seq
505 aa
AA seq
DB search
MSRNYNDELQYLDKITSNCWRIKKGFVPNMQVEGNFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDDPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFNHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSEVFSTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaaattataacgatgagctgcagtacctggataaaatcaccagtaactgctgg
aggattaaaaagggattcgttcccaacatgcaggtcgaggggaatttctacgtcaatgat
tctctggagaagctgatgtttgaggagcttcgtaacgcctgtcgagggggaggtgtgggt
ggcttccttccggccatgaagcagatcgggaacgtggcggcgctgcccgggatcgtgcac
aggtccatcggtctcccagacgtccactccggatacgggtttgctatcggaaacatggcg
gcctttgacatggatgaccctgatgctgtggtgtctccaggtggcgtcggctttgacatc
aactgcggcgtccgtctgctgaggacgaacctggacgagggcgacgtgcagccggtgaag
gagcagctggcccagtccctgttcaaccacatcccggtgggagtcgggtccaagggagtc
atccccatgtcagccaaggacctggaggaggctctggagatgggcgtggactggtctctg
agggagggatacgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggcagaccccaacaaggtctcctccaaggccaagaagagaggcctgccccagctcggg
actctgggagcaggaaaccactacgccgagatccaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaaaggtcaggtgtgtgtgatgatccacagc
ggcagcagaggccttggacaccaggtcgccacagatgctctggttgccatggagaaggcg
atgaaaagagataagatcacagtgaacgaccgtcagctggcctgcgctcgcatcacctct
caggagggccaggactacctgaagggcatggccgccgcaggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggccttctccgaggtgttcagcaccacgccg
gacgacctggacatgcacgttatctacgacgtctcgcacaacatcgctaaggtggaggag
cacatggtggacgggaagcagaagactctgctggtccaccgcaaaggatccacccgagcc
ttccccccacaccaccccctcattcctgtagactaccagctcacaggtcagcccgtgttg
atcggagggacgatgggaacctgcagctacgtcctcacagggacggagcagggaatgaca
gagacgttcggcaccacctgtcacggagcgggtcgagctctctctcgagcaaagtcccgc
aggaacctggacttccaggacgtcctggacaaactggccgacatgggcatcgccatccga
gtggcttcacccaaactggtcatggaggaggctcctgaatcatacaaaaacgtgacggat
gtcgtcaacacgtgtcacgacgctggaatcagtaagaaggcgatcaaactgaggccgatc
gctgtgattaaaggctga
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