Lates calcarifer (barramundi perch): 108883486
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Entry
108883486 CDS
T04895
Name
(RefSeq) tenascin-N isoform X1
KO
K06252
tenascin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108883486
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108883486
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108883486
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108883486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Tenascin
EGF_2
Arylsulfotran_N
hEGF
DUF460
EGF
Motif
Other DBs
NCBI-GeneID:
108883486
NCBI-ProteinID:
XP_050925991
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All DBs
Position
LG4:complement(13044328..13096947)
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AA seq
1208 aa
AA seq
DB search
MTTRLLWRALCLLALLCTISHFSSADNHPDPSAPEQGVTFSHVYKIDIPGSSSCKLEHLP
TQDKTGLQTETTTNGENDIIFRHNIRLQTPKCDCEDSESFKSLLYRVNGLEEEVNYLKTQ
CSQGCCGRGGAAGVDTSCSGHGTYQHDTCSCLCDPGWEGPDCSVSTCPDDCNDNGRCVDG
KCVCHQGYTGDDCSQLMCPDNCNDKGQCVDGKCVCFPHFTGEDCSVQKCPNDCIGNGQCV
DGQCICDEGFYGEDCSLVFGPQGLRLVQVTDVSLLVEWEFVRGAEYYILTYHPRGDESAL
EQVRIPNTENSYLITGLTPGVTYIVQVYAVIKEIQSEADKIEATTDVSAIDDIQVLGQTE
VTIDVDWKNPAAEVDHFRLTHTDPEGQEEEMNVQMSQEARTKHTIVGLYPGTEYLISVQA
IKGTVEGKQASVTGATDIDAPTNLVATEVTEDTATVSWDRVQAEIQGYMLSYTSAEGSSS
EIPVGRDSTSYRLVGLRPGVLHTVYIWAYKGDKVSRKSSTEAETELDAPSNILAHDETES
SFKVSWDHTQAEIDGYILTYSSSEGSSEEIPVGSDRTSYLLTGLRPGVLYTVYIWAVKGI
KASRKISTQAETELDAPANLLAQDETESSFIVSWDPVLAEIDGYRLTYSSSEGSSGEIPV
GPDSTSYSLTGLRPGVLYTVYIWAIKGNKASKKISTQAETELDAPANLLARDETESSFSV
SWDPVQAEIDGYILTYSSSEGSSEEIPVRSDSTSYSLNGLRPGVLYTVYIWAVKGNKASK
KISTKAETELDAPANLFAQDETESSFIVSWDPVLAEIDGYRLTYSSSEGSSGEIPVGPDS
TSYSLTGLRPGVLYTVYIWAIKGNKASKKISTQAETDIDAPKDLKATDVKMESASLTWIP
PLADIDGYILTYRDEEGNMETVEKQLGASESSFAVSGLETGKKYIVTIIAYRGNKRSKVV
ETIFKTVGLLYPFPMDCIQILKNGNKKSGIYTIYINNDRSKPIEVYCDMDTDGGGWLMLQ
RRTTGKLDFMKRWRQYIAGFGDMNDEFWIGLDKIYELTNTPTQYELRFDLGLGSERAYAV
YDNFKIAPVKQKFKLTIGKYRGTAGDAMTYHQGRPWTTIDSDNDIALGNCALTHRGAWWY
KNCHLANLNGKWGDNRHSLGVNWEPWKGHLMSLDFTEMKIRPVGALSSRKRRSLLAREKN
RNTNLQKK
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgaccactagactcctgtggagggccctgtgcctgttggccctgctctgcaccatctca
cacttcagctctgccgacaaccacccagacccctcagccccagagcagggagtcaccttc
agccacgtctataaaatcgacatcccagggagctccagctgtaaactagaacacctgcca
acccaggacaaaacaggtctgcagacagagaccactaccaatggagagaatgacatcatc
ttcagacacaacatcaggctgcagacgcccaagtgtgactgtgaggattctgaaagtttc
aagtctttgttgtacagagtcaatgggctggaagaagaagtcaactacctaaagacccag
tgttctcagggctgttgtggaagaggtggtgctgcaggtgtggacacaagctgtagcggc
catggtacttaccagcacgacacctgtagctgcctctgtgacccagggtgggaaggccca
gactgctcggtgtccacatgcccggatgactgcaacgacaacggacgatgcgtggatggg
aagtgcgtgtgccaccagggctacacgggagacgactgtagccagctgatgtgtccagac
aactgcaacgacaagggacaatgtgtggatgggaagtgcgtgtgtttcccacacttcacc
ggcgaggactgcagcgtccagaagtgtccaaacgactgcatcggtaacggccagtgtgtg
gacggccagtgtatctgtgatgaaggcttttacggggaggactgttcattagtctttggc
cctcagggcctgcggttagtccaggtgactgacgtctctctcctggttgagtgggagttc
gttcgtggggcagagtattacattttgacatatcatcccagaggtgatgagagtgccctg
gagcaggttcggattcctaacacagagaactcctacctcatcacaggactgactcctggg
gtcacctacattgtccaggtgtatgcagtcatcaaagaaatccaaagtgaagcagacaaa
atcgaagctaccacagacgtctcggcgatagatgatatccaagttcttggccagacagaa
gtcactatcgatgtggactggaagaatccagcagctgaagtggatcacttcagacttaca
cacactgacccagaggggcaggaggaggagatgaacgtgcagatgagccaggaggcacgc
accaaacacactattgttggtctgtatccaggaacagagtacctgatctcggtgcaggcc
atcaaaggaacagtggagggcaaacaggcttctgtcactggtgccacagacattgatgcc
ccaacaaacctggtcgccactgaggtgacagaggacactgcgacggtgtcatgggatcga
gtccaggcagaaatacagggctacatgcttagctacacctctgctgagggctccagctca
gagatccccgtaggccgtgacagcacctcatacagactggttggcttgaggcctggagtt
cttcacacggtctacatctgggcctacaagggagacaaagtcagcagaaagagttcaaca
gaagctgaaacagagctggatgcccctagtaacatcttggcccatgatgagacagagtcc
agcttcaaggtgtcctgggatcacactcaggcagaaattgatggctacatcctaacctac
agctcttctgagggctcaagtgaggaaatcccagttggatctgaccgtacttcttatctg
ctgactggcctgaggccaggcgtcctctacactgtgtatatttgggccgtcaaggggatc
aaagccagcaggaagatctccacacaagcagagacagaactggatgctcctgctaatctc
ttagcccaagatgagacagagtccagcttcattgtgtcatgggatccagtcctggcagaa
attgatggctacagactcacctacagctcttctgagggctctagtggggaaatcccagta
gggcctgacagcacctcttatagtctgactggcctgaggccaggggtcctctacactgtg
tacatctgggccatcaaggggaacaaagccagcaagaagatctcaacacaagcagagaca
gaattggatgctcctgctaacctcttagctcgagatgaaacagagtccagcttcagcgtg
tcatgggacccagtccaggcagaaattgatggctacatcctaacctacagttcttctgag
ggctctagtgaggaaatcccagtcaggtctgacagcacgtcttacagtctgaatggcctg
aggccaggcgtcctctacactgtgtacatctgggccgtcaaggggaacaaagccagcaag
aagatctcaacaaaagctgagacagaactggatgctcctgctaatctatttgcccaagat
gagacagagtccagcttcattgtgtcatgggatccagtcctggcagaaattgatggctac
agactcacctacagctcctctgagggctctagtggggaaatcccagtagggcctgacagc
acctcttacagtctgactggcctgaggccaggggtcctctacactgtgtacatctgggcc
atcaaggggaacaaagccagcaagaagatctcaacacaagcagagacagatattgatgcc
cccaaggacctgaaggctacagatgtgaaaatggagtcggcatctttgacctggattcct
cctctggctgacatcgatgggtacatcctcacctacagagatgaggaaggcaacatggag
actgttgaaaagcagcttggagccagtgagagcagttttgctgtatctggactggaaacg
gggaagaaatacatcgtcaccatcattgcctacaggggcaacaagaggagcaaggtggtt
gagaccatctttaaaacagttggcctcctgtaccccttccctatggactgcattcagatc
ttgaagaatggcaataagaagagtggtatctacaccatctatattaacaatgaccgctcc
aaaccaattgaggtctactgcgacatggacactgatggaggcggctggctgatgctccag
cgtcgtaccactggcaaactggacttcatgaaacgctggaggcagtacatagcaggtttt
ggcgacatgaacgacgagttctggattggtctggataagatatatgagctcaccaacact
ccaacgcaatacgagttgcggtttgacttgggcctgggctcagagagggcctacgctgta
tatgacaattttaagatcgctcccgtcaaacagaagttcaaactcaccattggcaaatat
cgtgggacagcaggtgatgctatgacctaccaccaaggccgaccctggactactattgat
tcagataatgacatcgccctgggtaactgtgccctgacccaccgtggtgcctggtggtac
aaaaactgtcacctggccaacctgaacggcaaatggggagacaatagacacagtttggga
gtgaactgggaaccgtggaagggccacctgatgtccctcgacttcacagagatgaagatc
cgacccgtgggagccttgtccagcaggaagaggcgatcgttgttggccagagagaagaac
agaaacacaaacctccagaagaaatag
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integrated database retrieval system
