KEGG   Lates calcarifer (barramundi perch): 108884325Help
Entry
108884325         CDS       T04895                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03030  DNA replication
lcf03410  Base excision repair
lcf03420  Nucleotide excision repair
lcf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108884325 (lig1)
   03410 Base excision repair
    108884325 (lig1)
   03420 Nucleotide excision repair
    108884325 (lig1)
   03430 Mismatch repair
    108884325 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lcf03032]
    108884325 (lig1)
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108884325 (lig1)
Enzymes [BR:lcf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108884325 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     108884325 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108884325 (lig1)
DNA replication proteins [BR:lcf03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    108884325 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     108884325 (lig1)
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108884325 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     108884325 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     108884325 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 108884325
NCBI-ProteinID: XP_018533688
LinkDB All DBs
Position
Unknown
AA seq 1015 aa AA seqDB search
MQRSIASFFQPKSKDKDIQKKATDEPVKKPVKSPLKVQNGVQEADSPIKKVTKRSRQILD
SDDDEAPVVKEQVAAKGQGDKEAPSKTEKKDDVFKAVPTPLSPPPAPTTPVTPATPATPA
TPASSASPGTPSTPNSISPSGIVKRKTARKMFPKRKLDETRSGSESQKDEAEAKEEQGQQ
NKRPRVETSASSAGNTGEPMEEGAKEEEVEKAVTEANSPDEEEENEKKEEGEEAKEEERE
ERKSSDEREKKAEGAEKKNEAKEKMDDEKGPAVAKKEVVEKDTREGEESPKSQTVKKQKE
AKEQKDKEPAKKAPISSFFAPRKAAVKTEKPEKNDEEKKTSTERKSSAEESKDTKGDSTS
GQTDYDPSRPGYHPIDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLL
LSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGL
VAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARY
IVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSL
ILKQTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEA
AFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSE
AVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRAL
LRESFSEVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHN
WLKLKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDENEEFQSVCKIGTGFK
DEDLEQHYKFLKDHILPKPRAYYRFDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGM
VDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq 3048 nt NT seq  +upstreamnt  +downstreamnt
atgcagcggagcatcgcatccttctttcagcccaagagcaaagacaaggacattcagaag
aaagccacagatgaaccagtgaaaaaacctgtcaagagccctctcaaggtgcagaacggt
gtccaggaagccgactcgcccatcaagaaggttaccaagcgcagccgtcagatcctggac
agcgacgatgacgaggcaccggttgttaaagagcaagtcgccgccaaggggcaaggagac
aaagaagctcccagtaaaacagaaaagaaggatgatgtgtttaaggcagttcccaccccc
ctgtctccaccaccagccccaaccacccccgtaacaccagccactccagccactccagcc
actccggcctcttcagcttcaccggggacccccagcactcctaactccatctccccgtct
gggattgttaaacgcaagaccgcgaggaagatgttccccaagaggaagctcgatgagacc
aggagcggcagcgagagtcagaaggacgaggccgaggccaaggaggagcagggtcagcaa
aataaacgaccccgtgtggagaccagtgccagcagtgcagggaacaccggtgaacccatg
gaggagggagcaaaggaagaagaagttgaaaaggcagtgacggaggctaacagcccagat
gaggaggaggagaacgagaagaaagaggaaggagaggaggccaaggaggaggagcgggag
gagagaaagagctctgatgagagagaaaagaaagctgagggggcggaaaagaaaaatgaa
gcaaaggagaagatggatgatgagaaagggcccgccgttgccaagaaggaggtggttgaa
aaggacacgcgagagggagaagagagcccaaaaagtcaaacagtgaaaaagcagaaagaa
gcaaaagagcagaaagataaggagccggccaagaaagcccccatcagcagtttctttgct
cctagaaaagctgcagtgaagacagagaaaccagagaagaatgacgaagagaaaaagacg
agtacagagaggaagagttcagcggaggagagcaaagacacaaaaggtgactcaacttca
ggacagacagactatgatccgtccagaccaggctatcatcccatagaccacgcctgttgg
aagcagggtcagaaagtgccgtacttggcggtggctcgcacctttgagaagattgaagag
gactctggcaggctgagaaacatcgagacgctgtcgaacctgcttcgctccgtgctgctg
ctctctccagacgacctgctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcc
tacctggggatggagcttggcgttggagagacggtgctgatgaaagctgttgctcaagca
accgggcgacaattggacaaaatcaaagcagaggcgcaggagaaaggagatttgggccta
gtggccgagagttcccgtagcaaccagcgcatgatgttccaaccggccagtctgacagca
gggggcgtgttcaggaaattgaaggaaattgccagcatgagtgggaactcggccatgaat
aagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttccgaggcccgctat
atagtcaggtccctcgctgggaagctgaggataggcctggctgagcagagtgtcctatca
gcactcagccaggctgtgtgcttgaccccacctggacaaggttttcctcccgctgtgatc
gacgcagggaaggggatgagcgctgagagcaggcgggcctggatcgaagagaaaagtctc
attctcaaacagacttactgtgagatgcccaattacgacgtcctcatccctgttctgcta
aaagaaggcatagaccagctacccaatcactgcaagctcactccaggtgtaccgctgaga
cccatgttggcccaccccacgaagggcgtcggcgaggtgatgaagaagtttgacgaggca
gcgttcacctgcgagtacaagtacgacggcgagcgtgcgcagattcacatcctggagagc
ggtgaggttcgaatattcagccgtaaccaggaggacaacaccagcaaataccccgatatc
atctcccgcattcccaaggtgaagaaggactctgtggtatcctgcgtcctggactcagag
gctgttgcctgggatcgtgagaagaaacagatccagcccttccaggtcctcaccacccgt
aagagaaaggacgtggatgcctcggagatcaaagtgcaagtgtgtgtgtacgcctttgac
ctcctctatctcaacggcgagtccctggtgcgacagccgttgtgtcggcgtagggctctg
ctgagagaaagcttctcagaggtggagggagagtttgtgttcgcccgatccatcgactcc
gacaacaccgacaccatcgccgagttcctggagcagtctgtccgagattcctgtgagggc
ctgatggtgaagacgctggagaaggatgccacctatgaaattgccaagcgctctcataac
tggctcaagctgaagaaggactacctggagggggtgggtgacacggtggacctgtgtgtg
atcggcgcctacctggggaaaggcaagaggacgggcacctacgggggcttcctgctggcg
tgctacgatgacgagaacgaagagttccagtctgtctgcaagatcgggacaggcttcaag
gatgaagatctggagcagcattacaagttcttaaaggatcacattctgcccaagccccgt
gcctactaccgcttcgaccaatcagcagagcccgacgtgtggctcgacgccgtacaggtt
tgggaggtgaagtgcgccgacctgtcgctgtcgccggtctacaaggctgcaatgggaatg
gtggatccagagaagggcatttctctgaggttcccgcgcttccttcggatcagagacgac
aaaaaaccagaggacgccacgactggagctcagattgctgatttgtacaagaagcagcag
cagattcagaatcagggggagaaagctgacccagaggactactactga

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