Lates calcarifer (barramundi perch): 108885379
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Entry
108885379 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: trace amine-associated receptor 13c-like
KO
K05051
trace amine associated receptor
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108885379
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
lcf04030
]
108885379
G protein-coupled receptors [BR:
lcf04030
]
Rhodopsin family
Biogenic amine
Trace amine
108885379
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srsx
7tm_4
VEG
7TM_GPCR_Srx
Motif
Other DBs
NCBI-GeneID:
108885379
NCBI-ProteinID:
XP_018535224
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Position
LG5:complement(20732532..20741710)
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AA seq
331 aa
AA seq
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MMDGVEGAELCFPQLLNSSCMGLMRPRTEAVLLYTLFSSVAVLTVALNLLVIISISHFRQ
LHTPTNLLLLSLAISDLLVGLLVMPVEAVRFTETCWLLGDLMCALSYIIGFTLTSASVGN
MVLISIDRYVAICYPLQYPSRITLSRVEVSVCLCWACSLLYNGLILKDHLRQPDRYSSCH
GECVVVINYASGAVDLVFTFIGPCSVIVILYMRVFVVAVSQARAMQSHVTAISGSSVTVT
AKKSEKKAARTLGVVILVFLMTFCPYYYPSLAGQATSNSALAWPIVSWVLYFNSCLNPLI
YTFFYPWFRKAIKFIVTLRILQQDSSQASIL
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgatggacggtgtggagggagctgagctctgcttcccccagctcctgaactcatcttgc
atgggtttaatgcgccctcgcactgaggccgtcctcctctacacgcttttctcttcagtc
gccgtgctcactgtcgctctcaacctgctggttatcatctccatctcccacttcagacag
ctccacacccccaccaacctgctcctgctctccctggccatctcagacctcctcgtgggg
ctgctggtgatgccggtggaggcggtaaggttcacagagacctgctggctgctgggcgat
ctcatgtgcgctctgtcttacattatcggcttcactctcacctcagcctctgtgggaaac
atggtgctcatatccatcgaccgatatgtagctatttgttaccctctgcagtaccccagc
agaatcactctcagcagagttgaggtgtctgtgtgtctgtgctgggcctgctcacttctc
tacaacgggttgatcttaaaggaccacctcaggcagccagacaggtacagctcctgccac
ggggagtgcgtggtggtgattaactacgcctccggtgccgtcgacctcgttttcactttc
atcggcccctgctcagtcatcgtcattctgtacatgagggtgtttgtcgtggcggtgtct
caggctcgtgccatgcagtctcacgttacagccatttcaggcagttcagttacagtcact
gcaaagaagtcagagaaaaaagcagccaggaccttgggtgttgtcatactggtgtttttg
atgactttctgtccgtattactacccttctcttgcaggacaggccacctcaaacagtgct
ttagcttggcccattgtgtcctgggtgttgtattttaactcatgtttgaacccgctcata
tatacttttttctacccatggtttagaaaagctatcaaattcattgtcaccctgaggata
ctacagcaggactcctctcaggcgagcatactttaa
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