Lates calcarifer (barramundi perch): 108886383
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Entry
108886383 CDS
T04895
Name
(RefSeq) ubiquitin conjugation factor E4 A
KO
K10596
ubiquitin conjugation factor E4 A [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108886383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108886383
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108886383
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
U-box type E3
108886383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Glyco_hydro_85
Motif
Other DBs
NCBI-GeneID:
108886383
NCBI-ProteinID:
XP_018536737
LinkDB
All DBs
Position
LG21:10776073..10788777
Genome browser
AA seq
1075 aa
AA seq
DB search
MTDQGNNNQNISCNPFAALFSSLADAKQFASGQKPQQQSAEPPLEDSGESQSDSENSVSD
SVDDNDDSVAEISRSFRSRQELCEQLNVNHMIQRIFLITLDNSDPSLRGGNGIPPRCVYL
EEMAADLDGQDWLDMDNIEQALFNRLLLLEPGNHLIYMTSCSAVNLSADRDAGEKCAIPY
LFACYQRAKEEVTKVPEKLLSFAVRCKNLTVSNTRTVLLTPEIYISQNVYEQLLDLLLEG
FSGAQPEEVVEFVEEVIAGLLSDQEVRTFEEVMVPVFDIFQGRIKDLDLCQPLLYSYLDV
LLYFSHHKDIAKVLVEHIQPKDPANGLQYQKSLLGTVLSISCLLKTPGVVEGHGYFLNPS
RSSAQETKVQEANIHQFMGQFHDKLHQVLKNLLQRSGETRHLLLSWLGSCLQANAGRAKI
WANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCRPRSPKLLTFNPTYCALKELSEEERR
NRNVHARGLDKETCLIPVPPQQPVESAQSYSLLTENLILTQLTLHLGFHRLHEQMVKMNQ
SLHRLQVTWQEAQRTGNPMSEQLLEQFERLMIVYLSTKAATTQPAMLQCCLNLQASTAAL
LVQLGVGNQGPEHVALSFPLSSLQDTMLCYVPEFFAENLGDFFIFLRRFADDVLETSAES
LEQILNFITVFMGNVERMKNPHLRAKLAEVLEAVMPHMEPVAPGAAQPIVYQRERVFCSY
RHAPQLAEALITVFVDIEFTGDPHQFEQKFNYRRPMYPILKYMWGKDSYRESIKHLADYA
SENLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKVLQLERDRGEWEGLAPDARREK
ESSLQMFGQLGRFHNIMSNETIGTLAFLTSEIKGIFVHPFLAERIISMLNYFLQHLVGPK
MGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFSQTVRVLK
KINKPGDMIVAFGLLADKIKSHADRQQQEEETYSDAPDEFLDPIMSTLMLDPVLLPSSNV
TVDRSTIARHLDQTDPFNRSPLTMDQIRPNEELKQQILQWLDKHKQERLQLGPSG
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccagggcaacaacaaccagaacatctcctgcaaccccttcgctgccctcttc
agctcactggctgatgccaaacagtttgcatcaggccagaaaccacaacagcagtctgct
gaaccaccattggaggactcaggagagagccagtcagactcagaaaactctgtgtcagac
agcgttgatgacaatgacgactccgtggcagagatcagccgctcgttccggtcccgccag
gagctgtgcgaacagctcaatgtcaatcacatgatccagcgaatatttctcatcactctg
gacaacagtgaccccagtctaagaggaggtaatgggatccctcctcgctgtgtgtacctg
gaggagatggctgcagatctggatggacaggactggctggatatggacaacatagaacag
gctctgttcaaccgtctgctgctgctagagccaggaaaccacctcatctacatgacgtca
tgcagcgctgtaaacctgtctgcagatcgtgatgcaggagagaaatgtgccatcccctac
ctatttgcctgttaccagagggctaaagaggaggtgacgaaggtaccagagaagttactg
tcgtttgctgttcgctgtaagaacctgacagtttcaaatacacggacagttcttctcacc
ccagagatttacatcagccagaacgtctacgaacagcttctggacctgctgctggaaggt
ttcagtggagcacagccagaggaggtggttgagtttgtggaggaggtcattgctggcctg
ctctctgaccaggaggtgcgtaccttcgaggaggtgatggttccagtgttcgatatcttc
cagggacgcatcaaagacttggacctctgccagcctctcctttattcctacttagatgtc
ctcctctatttcagccaccataaagatattgccaaggtattggtggaacatattcagccc
aaagacccagccaatggtttgcagtaccagaagagcctgttggggacagtgttgagtatc
tcttgcttgttaaaaaccccaggtgtggtagaggggcatggctacttcctgaacccctcc
cgctccagcgcccaggagacaaaggtgcaggaggccaacatccaccagtttatgggccag
tttcacgacaagttgcaccaggtcttgaaaaacttgctccagcgatcaggcgagacgcgc
cacctgctgctctcgtggctgggcagctgtctgcaggctaacgctggtcgagccaagata
tgggccaatcagatgcccgagattttcttccagatgtatgcttcagatgcgttcttttta
aatttgggtgcagctctgctgaagctgtgccagcccttctgcaggcctcgttcgcccaag
ctgctcaccttcaacccgacctactgtgcactcaaagagctgagtgaagaagagaggcgc
aaccgcaatgtgcatgcaagaggtctcgacaaggaaacctgtctgatccctgtgccccct
cagcagccggtggagtctgcacagtcctacagcctgctgactgaaaacctcatcctcaca
cagctcaccctgcatctcggcttccacaggctccacgagcagatggtgaagatgaaccag
tctctccaccggctccaggtgacgtggcaggaggcccagcgaactggcaacccgatgtcg
gagcaactcctggagcagtttgagcgtctgatgattgtttatctgtcaaccaaagctgcc
actacgcagccagctatgctgcaatgctgccttaacctccaagcctccactgctgctctg
ctggttcagcttggtgttggaaaccaggggcctgagcatgtagcactcagtttccccctg
tcctccctgcaggatactatgctctgctatgtaccagagttttttgcagaaaacttggga
gattttttcatcttcctgcggcgattcgcagacgatgtcttggagacttctgcagaaagt
ctggagcagattcttaacttcatcactgtcttcatgggaaatgtagagaggatgaagaac
ccacacttacgagcaaagcttgcagaggtcttagaggcggtgatgccacacatggagccg
gtggctcctggtgctgctcagccaattgtttaccagcgagagagagtcttctgctcctac
agacatgcacctcagctggccgaggccctcatcactgtgtttgtagacattgaattcaca
ggtgatcctcatcagtttgaacagaaattcaactacaggagacccatgtatcccatcctc
aagtacatgtggggcaaagacagctatagagagagcatcaagcatttggccgactatgca
tctgagaacctggaggccatgaacccccctctgttcctcaggttcctcaacctactgatg
aatgatgccatcttcctactggacgaggctattcagtacctgagtaaaatcaaggttctg
cagctggagcgggatcgaggagagtgggaaggcctggcccctgatgcccgaagggagaag
gagtcaagcctacagatgtttggacagctgggacgcttccacaacatcatgtctaatgag
accatcggcacactggcctttctcacctcagaaatcaaggggatatttgtgcaccccttc
ctggctgagaggatcatctccatgctgaactacttcctgcagcacctggtgggtcctaaa
atgggtgcccttaaagtcaaggacttcagtgagtttgacttcaagccccagcagctggtc
tctgacatctgcaccatctacctgaacctgggtgacgaggagaatttctgtgctacagtc
ccaaaggatggacgatcgtactctccgaccctcttctcccagaccgttagggtactgaag
aagatcaacaagcctggagacatgatagtagcttttggacttcttgctgataaaataaag
tcccatgcagacagacagcaacaggaagaggagacatactcagatgctccagatgagttc
ttggaccccatcatgtccactctgatgctagatcctgttcttctgccctcttctaatgtt
acagtagaccgctcaactatagcaaggcaccttgatcagacagacccgttcaatcgcagt
cctctaaccatggaccagatcaggccaaatgaggaactcaaacagcagatcttacagtgg
ctggataagcataagcaggagaggctgcagctgggacccagtggctag
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