KEGG   Lates calcarifer (barramundi perch): 108888123Help
Entry
108888123         CDS       T04895                                 

Gene name
sdha
Definition
(RefSeq) succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
  KO
K00234  succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf00020  Citrate cycle (TCA cycle)
lcf00190  Oxidative phosphorylation
lcf01100  Metabolic pathways
lcf01200  Carbon metabolism
Module
lcf_M00009  Citrate cycle (TCA cycle, Krebs cycle)
lcf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
lcf_M00148  Succinate dehydrogenase (ubiquinone)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00020 Citrate cycle (TCA cycle)
    108888123 (sdha)
  09102 Energy metabolism
   00190 Oxidative phosphorylation
    108888123 (sdha)
Enzymes [BR:lcf01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.5  With a quinone or related compound as acceptor
    1.3.5.1  succinate dehydrogenase
     108888123 (sdha)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: FAD_binding_2 Succ_DH_flav_C Pyr_redox_2 GIDA Thi4 FAD_binding_3 DAO
Motif
Other DBs
NCBI-GeneID: 108888123
NCBI-ProteinID: XP_018539471
LinkDB All DBs
Position
Unknown
AA seq 663 aa AA seqDB search
MASVRAASRLLSKRVLSKTTTVPAASVQGSRNFHFSIYGKKKNAKVSDDISTQYPVVDHE
FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDDWRW
HFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENFGMPFSRTEDGKIYQRAFGGQSLKYG
KGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECKGVIALCMED
GSIHRFRAQNTVIATGGYGRTYFSCTSAHTSTGDGNAMVTRAGLPCQDLEFVQFHPTGIY
GAGCLITEGCRGEGGILINSEGERFMERYAPNAKDLASRDVVSRSMTIEIREGRGVGPEK
DHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGVPTNYKGQV
ITHTGGEDKVVRGLYACGEAACASVHGANRLGANSLLDLVVFGRACALTIAEEHKPGEKL
SPLQPSAGEESVANLDKLRFANGNLRTSEIRLNMQKTMQAHAAVFRTGSVLKEGCDKMDA
IYQTLDDIKTFDRGIVWNTDLVETLELQNLMLNAVQTIHAAEQRKESRGAHAREDFKDRV
DEYDYSKPLQGQEKKPYDQHWRKHSLSFVDPKTGKVTLKYRPVIDSSLDEQDCAHVPPAI
RSY
NT seq 1992 nt NT seq  +upstreamnt  +downstreamnt
atggcgagtgttcgtgctgcgtcccgtctcctctccaagagggtactatctaaaacgaca
acagtcccggctgcttcagttcagggttccaggaactttcacttctccatctatggcaag
aagaaaaatgccaaagtatcagatgatatctcgactcagtacccagttgtggatcatgag
tttgatgctgtggtggtaggagctggaggggcaggacttagggcagcctttggcctgtca
gaggctggcttcaacactgcatgcgtcaccaaactcttccccaccaggtctcacactgtt
gctgcacagggtgggattaatgcagctcttgggaacatggaggaggatgactggaggtgg
catttctacgacacagtaaagggatctgactggctgggagaccaggatgctattcactac
atgacagagcaggcacctgcagctgtggtggagctggagaactttggtatgccattcagc
cgcactgaagatgggaagatctaccagagagcctttggaggtcagagtctcaagtatgga
aaaggaggccaggctcaccgttgctgctgtgtagcagacaggacaggacactcactgctg
catacactttatggtcggtcactccgttatgacactagttactttgtggagtactttgcc
ctggacctgctgatggaaaatggagagtgtaaaggagtcattgctctctgcatggaggac
ggatccattcaccgcttcagagcccagaatactgtcattgctactgggggttatggaaga
acctatttcagctgcacatctgcccacactagtacgggggatggaaatgcaatggtgacc
agagctggcctgccctgccaggatttggagtttgtacagttccatcccactgggatctac
ggagctggttgcctgatcacagagggttgccgtggtgagggagggatcctgatcaacagt
gagggagagcgcttcatggagcgctacgcacccaacgccaaagacctggcctccagagac
gtggtgtcccgctccatgaccatcgagatcagagagggcaggggtgtcggtccagagaag
gaccacgtgtacctgcagcttcaccacctacctcctcagcagctggccacgaggctgcct
ggtatctcagagacagccatgatcttcgctggagtcgacgtcaccaaggagcccatccct
gtcctgcccaccgttcactataatatgggtggagtgcccacaaactacaagggacaggtg
atcactcataccggtggagaggacaaggtggttcggggactgtatgcctgtggtgaggct
gcctgtgccagtgtccacggtgctaaccgactgggtgccaactccctgcttgatctggtg
gtatttggcagagcctgcgctctcaccatcgccgaagaacacaaacctggagagaaactg
tctcctctgcagcccagtgcaggagaggagtctgtggccaacctggacaagttgaggttt
gccaacggaaacctaaggacctctgagatcaggctcaacatgcagaagaccatgcaggct
catgctgctgtgttccgtaccggctctgttctgaaggagggatgcgacaagatggatgct
atttaccagaccctggatgacatcaagaccttcgacagaggcattgtgtggaacacagac
ctggtggaaacattggagctacagaatctgatgcttaacgctgtccagaccatccacgct
gctgagcagaggaaggagagcaggggagcccacgccagagaggatttcaaggaccgtgtg
gatgaatatgactactccaagcccctgcagggtcaggagaagaagccatacgatcagcac
tggaggaaacacagtctgtcctttgttgaccccaagactggaaaggtgaccctgaagtac
cgtcctgttatcgacagctctctggacgaacaggactgcgctcacgtccctcctgccatc
cgctcctactaa

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