KEGG   Lates calcarifer (barramundi perch): 108890566Help
Entry
108890566         CDS       T04895                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatase and associated proteins [BR:lcf01009]
    108890566 (hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA Biogenesis [BR:lcf03019]
    108890566 (hdac6)
   04131 Membrane trafficking [BR:lcf04131]
    108890566 (hdac6)
   03036 Chromosome and associated proteins [BR:lcf03036]
    108890566 (hdac6)
Enzymes [BR:lcf01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108890566 (hdac6)
Protein phosphatases and associated proteins [BR:lcf01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108890566 (hdac6)
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     108890566 (hdac6)
Membrane trafficking [BR:lcf04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    108890566 (hdac6)
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     108890566 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP
Motif
Other DBs
NCBI-GeneID: 108890566
NCBI-ProteinID: XP_018542983
LinkDB All DBs
Position
Unknown
AA seq 1107 aa AA seqDB search
MFHTSLRLFRLSPHLFFFFFFFEMFLLLSSSSKGTEERRGGNSLKEVKRRGRMERSREEE
LNDRLQTLDLSSRSAASGTGLIFSEIFTHHKNLWEPSHVESPDRVTSIIEELEKQELLSH
CIRVEPRPASEEELLLAHMKQYVDLMRSTQTISETELHALSEKYDSIYFHPETFQVSVLA
VGSVLQLVDQVMTSDLRNGFAVIRPPGHHAQVNQASGYSVFNNVAIAARYAQTRHSVSRV
LIVDWDVHHGQGIQYLFQEDPSVLYFSVHRYEQGSFWPHLPESDSRFVGSGRGEGRNINL
PWNKTGMTDADYIAAFQQLLLPVAYEFQPQLVLVSAGFDAAVGDPKGEMCVSPQCFQVLT
HLLMSLAEGRLVLALEGGYNLQSTAEGAAACVRALLGGGCPPLTPPTAPSDSALQSISQT
LCALYPHWASLQVLEGSSLAERDLIRATTNEQSSKQTGSTPTVAVTTGLVYDERMMEHLN
MWDRHHPEQPQRISKIFSKHQQLGLVDRCQRIPARLATEEELSMCHSVQHVEQMKATALM
KPRDLHKLGEEFNSIYINNQSFQSAQLAAGSCFNAVEAILSGEVSNGVAIVRPPGHHAER
DSPCGFCFFNTAALTARHAQKISHHSPLRVLILDWDVHHGNGTQHMFEDDDSVLYVSLHR
YDNGTFFPSSEDAAADRVGVGRGAGCNVNVAWSGGRMGDSDYLAAFHHIVMPIATEFNPG
LVLVSAGFDAARGDPLGGYHVTPEGYAHLTHLLMSLAGGRVLLILEGGYNLSSISDSMAM
CTSVLLGDPPPSLVTPLPPPHHSAVATISEVIRHHAPYWRSLRIHIPESVRASLSSLKHR
GKRSSKGKGRKSEQSGGDKPPLPRTGAEDTTTERSLDQLAQGLASLDISQTSANHVPAVS
TPVGGARPKVRLSPEKVICADEVKVESSAAAAVQSQSADSARPQTVAVAAPELVAAGDEV
SGRVGVEPEAEGACGWSKPQMSVELTYGGQTDAPTLYVIDPLPWCPHLDAVKPLPPSGVD
VFLPCQDCGSDAENWICLTCYQVFCGRYVNEHMLTHGTVSEHPVVLSFSDLSVWCYLCEA
YIHNQILFEAKNAAHCAKFGEEIPPWS
NT seq 3324 nt NT seq  +upstreamnt  +downstreamnt
atgtttcacacttctctcaggctgttcagactcagtcctcacctcttcttcttcttcttc
ttctttgagatgtttcttctcctcagcagtagcagcaaagggacggaggagaggagagga
ggaaacagtctgaaggaggtgaagaggagaggaaggatggaaaggagcagagaggaggag
ctgaatgacagactgcagacactggacctgtccagtagatcagcagccagtggtacaggt
ctaattttctctgagatcttcactcatcataagaacctgtgggagcccagtcatgtagag
agtccagacagagtgacgtccattatagaggagctggagaaacaagagctgctgtctcac
tgcatcagagtggagcccagaccagcctcagaggaggagctgcttctcgctcacatgaaa
cagtatgtggacctgatgagatcgactcagacgatctcagagactgagttacacgctctg
tctgagaaatacgactcaatttacttccatcctgagaccttccaggtgtctgtgttagcc
gtgggttcggtcctgcagctcgttgatcaggtgatgacctctgacctcaggaatggtttc
gctgtcatcagacctccaggtcatcacgctcaggtgaaccaggccagtggttactctgtc
ttcaacaatgtggcgattgcagctcgatacgctcagaccagacactccgtcagcagggtg
ttgattgtggactgggacgttcatcatggtcagggcatccagtacctattccaggaagac
cccagcgtcctctacttcagtgtccacaggtatgagcagggctccttctggccacacctc
ccagagtctgacagtcggtttgtcggcagtggacgaggtgaggggagaaacatcaacctg
ccctggaacaagacgggaatgactgacgctgattacatcgctgcttttcaacagctgctg
cttcctgtggcctacgagtttcagcctcagctggttctggtctctgctggatttgatgct
gcagtcggagacccgaagggggagatgtgtgtgagtcctcagtgtttccaggtcctgact
cacctgttgatgagtttggctgaaggtcgactcgtcctcgctctcgagggaggttataac
ctgcagtcgacagcagagggcgctgcagcctgtgtcagagctctgctgggaggaggctgt
cctcctctgactccgcccaccgctccgtccgacagcgctctgcagtcaatctctcagacg
ctctgtgctctgtatccacactgggcgtctctacaggtgctggaaggcagctcgttggct
gagcgtgacctcatcagagcaacaaccaatgagcagagcagcaagcagaccggctccacc
ccaactgttgccgtgacaacaggcctggtttacgacgagaggatgatggagcacctgaat
atgtgggacagacatcatcctgagcagcctcagagaatctccaagatcttctccaaacac
cagcagctgggattggtcgaccgttgccaacggataccggctcgcctggcgacagaggag
gagctgagcatgtgtcacagtgtgcagcacgtggagcagatgaaggccacggcactgatg
aaacccagagatctgcacaaactgggagaagagtttaactctatctacatcaacaaccag
agcttccagtcggcccagttagctgctgggagctgcttcaacgccgtggaggccatcctg
agcggagaggtgagtaatggcgtggcgatcgtccgtcctcctggtcatcacgctgagaga
gactctccctgcggattctgtttcttcaacacggcggcgctcactgctcgccatgcccag
aaaatctcccatcattcaccactcagggtgctaattctggactgggacgttcaccatggc
aacgggacacagcacatgttcgaggacgacgacagcgtcctgtacgtctccctccatcgc
tacgacaacgggacgttcttcccgtcctcggaggacgccgctgccgaccgggttggcgtg
ggcagaggggcggggtgtaacgtcaacgtggcgtggagcggaggacggatgggagactct
gattaccttgctgcttttcaccacatcgtcatgccgatcgctaccgagtttaatcctggt
ctggttcttgtgtcagccgggttcgacgcagctcggggggatccactgggtggatatcat
gtgaccccagagggatacgcccacctcacacacctgctgatgtcactggccggggggcgg
gtcctactcatcctggagggaggctacaacctgtcctccatctctgactccatggccatg
tgcaccagcgtgctgctcggagaccctcctccatccctggtgacgcccctcccccctcca
catcacagcgccgtggcaactatcagtgaggtcatccgacaccacgccccctactggagg
tcgctgaggatacacatcccagagtctgtgcgggcgtccctgtcctccctgaagcatcgt
gggaaacgtagttctaaaggaaaaggcaggaagtcagagcagagcggtggagacaaacct
ccgttgcctcgtacaggagcggaggacacgacgacggagcgcagcctggaccagctcgct
cagggattggccagtctggacatcagtcagacctcagccaatcacgttcctgctgtgtcc
actccagtgggcggggccaggccgaaggtccggctcagcccggagaaggtcatctgtgca
gatgaagtgaaggtggagtctagtgcagctgcagctgtgcagagccaatcagcagacagc
gcacggcctcagacggttgccgtggcagcaccagagctggttgccgctggagacgaggtc
agtggcagagtgggggtggagccagaggcagagggagcgtgtggttggtcgaagcctcag
atgtctgtggagctgacgtatggaggacagacagacgcacccactctctacgtgatcgac
cctctgccctggtgtcctcacctggacgctgttaagcccctccccccctcaggtgtagac
gtcttcctgccatgtcaggactgcggctcagatgctgagaactggatctgtctcacctgt
taccaggtgttctgtggtcgttacgttaacgagcacatgctgactcacggaactgtgtct
gaacaccctgtggtcctgagcttctccgacctctctgtgtggtgttacctgtgtgaggcc
tacatccacaaccagattctgtttgaggctaaaaacgctgctcactgtgccaagtttgga
gaggagatccctccatggagctga

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