Lates calcarifer (barramundi perch): 108893878
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Entry
108893878 CDS
T04895
Name
(RefSeq) retinoblastoma-associated protein
KO
K06618
retinoblastoma-associated protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04110
Cell cycle
lcf04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108893878
04218 Cellular senescence
108893878
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108893878
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108893878
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108893878
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
108893878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rb_C
RB_A
RB_B
DUF3452
Motif
Other DBs
NCBI-GeneID:
108893878
NCBI-ProteinID:
XP_018547834
UniProt:
A0A4W6FUR4
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Position
LG20:11970273..11989572
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AA seq
913 aa
AA seq
DB search
MPPKKRNSGTTQSKGLKPSTESAPPDKKESPELSLKKHRDKDAEFVTLCKSLHVTDLVCD
RAWTLWKNVQESMDEVTDSQKRLWGACLFVIETDMDVACFTLTQVLKAVSLNVKQFMALV
RKLDVNMDTISTKVNSALTRLEKKYDVTLALYQRFEKTCKKIFALVSDGKEREIMRSCWT
MFLLAKGRVLQMEDDLVISFQLLLCTLELFIKRCPPDLLQPLYKSAISKVQSPPTRASRR
NQSKAKSRPPEPEVDVQLLETLCKENECNAEEVKNVYQTSFSAFLDSLDLSRSQDFPQVN
DFDQQYEEHYLKSRDIDGRLFFDGDETVLVPKVEISQVERTPKKNLPDEDTALIPPQTPI
RAAMTSIQQLRGDLISTGDQPSTNLATYFKNCTVDPTQDVVKRLETLGQTFSQRFGQAVG
PRCVILGKQRFTLGVRLYYKVMEAMLESEEKRLSVQNFSKLLNDSTFHTSLLACALEVVM
ATYGESSFKAGGYSHGGGGGDTAETDVCFPWILDVFSLAAFDFYKVIESFIKADPTLSKD
IVKHLETCENLIMERIAWRTGSPLFELLKQEHEGGAAEQVETPASFSQPLQHNHTAADLY
LSPMRPGLRVLPHESTATASSQASSQAPAQPASQTPRHRKSNSLSLFYKKLYRLAYTRLK
MLCSYLLSSHPELEPIIWTLFQHTLQHEYELMRDRHLDQLMMSAMYAICKVKSVDLRFKT
IVTAYKNMPNTNQETFKHVLITEGHYDSIIVFYNQVFMQRLKTNILQYASTRPPTLSPIP
QIPRSPYKFPNSPLRVPGSNNVYISPLKSPRMSPGIMTPRTRMLVSIGESFGLSGRFQKI
NQMVNSSSCKRALDLGPSPKPLKRLRFDGDGQDEADGSKSGGDSTLIQKLAEMSSTRSRM
QEQKMKEEEAKKE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgccacctaaaaagcgcaactctgggacgacacagagcaaaggtctgaagcccagtact
gaaagtgcccctccagacaagaaggagagtccagagttatctcttaaaaaacacagagac
aaggatgctgagtttgtgaccctgtgcaagagccttcacgtcacagacttggtgtgtgac
cgtgcctggaccctgtggaaaaatgttcaagagtccatggatgaagtcactgacagtcag
aaaaggctttggggtgcttgcctgtttgtgattgagacagacatggatgtcgcctgtttc
accttaactcaggttctgaaagcagtcagtctgaatgttaagcagtttatggcactggtg
aggaagttggatgtgaacatggatacaatcagcaccaaggtaaattcagcactgacgcga
ctggagaagaagtatgatgtgacactggctctctaccagaggtttgagaagacttgcaag
aaaatctttgctttggtttccgatgggaaggagagggagatcatgcggagctgctggaca
atgtttcttttggccaaaggaagggttttgcagatggaggatgacctggtcatatcattc
cagctgctgctttgtacgctggagttattcatcaagcgctgccctccagaccttctgcag
cctctttacaaatcagccatcagtaaagtccagagccccccaacacgagcgtctcgtcgt
aaccagagcaaagccaaatcccgacctcctgagccagaagtggatgtgcagcttctggaa
accttgtgcaaagagaatgaatgcaatgcagaagaggtgaagaatgtgtaccagaccagc
ttctctgctttcctggactcactggatctctctagatcccaagattttcctcaggtgaat
gactttgaccaacaatatgaagaacactacctcaagagcagagacattgatggacggctg
ttttttgatggagatgagactgttcttgtgcctaaagtcgaaatatcacaggtggagaga
acgccaaagaagaacctgccagatgaagacactgcactcatccctccacagactccaatc
agagctgccatgacctccattcagcagttgaggggcgatctcatctcgactggggaccag
ccatccactaatctggccacatatttcaaaaattgcactgtggacccaacgcaggatgtg
gtcaaacggttggagactctcggacagacgttcagccaaagatttggtcaggcagttggc
ccacgctgtgtaatacttggcaaacagagatttaccctcggtgtcagactatattacaaa
gtcatggaagcaatgttggaatcggaagagaagcgactgtctgtgcaaaatttcagtaaa
ctcctcaatgactccacattccacacatcactgttggcctgcgctttggaggtggtcatg
gcaacatatggagagagcagttttaaggctggaggatacagccatggaggtggtggtggt
gacacagctgagactgatgtgtgcttcccctggatactggatgtgttcagcctcgccgcc
ttcgatttttacaaagtcatcgagagcttcatcaaggctgaccccactctgagcaaagat
atcgtcaaacatctggagacgtgtgagaacctcatcatggagaggattgcatggaggacg
ggctccccgctgtttgaactgctgaaacaggagcatgagggtggagcggctgaacaggtg
gagaccccggccagtttcagccaaccactgcagcacaaccacactgcagctgatctgtat
ctgtcccccatgcgccctggtcttcgtgtcttgccccatgagtccacagccacagcctct
tctcaagcttcctctcaggctccggcccagcctgctagtcagactccacgacaccgaaag
tccaactctctcagtctcttctataaaaagttgtaccgcctggcctatacaaggctgaag
atgctctgctcctacctgctgtcctcccaccctgaactggagcccatcatatggacactc
ttccagcacactttgcagcacgagtatgagctgatgagagaccgccatctcgaccagttg
atgatgtcagccatgtatgccatatgtaaagtgaagagtgttgacctgcgcttcaagacc
attgtcacagcatacaagaacatgcccaacactaaccaggagacctttaagcatgtgttg
atcactgagggccactatgactccatcattgtcttctacaaccaagtgttcatgcagagg
ctgaaaaccaacatcctgcagtatgcatctaccaggccgcctaccctctctccaatccca
caaataccacgcagcccctacaagttccctaactcacctctgcgcgtgcctggcagcaac
aacgtgtacatctcccccctcaaaagcccacgcatgtccccgggtatcatgactcctcgc
accagaatgctggtatcgatcggtgaatcgtttgggctgtccggtcggttccagaagatc
aaccagatggtcaacagcagctcatgtaagagggctctggatcttggcccctctccaaag
cctctgaagagattgcgattcgatggtgatggacaggatgaagctgatggcagcaaatct
ggtggagattccacactgatacagaagcttgcagagatgagttccactcgcagtcgtatg
caggagcagaagatgaaggaagaggaagcaaaaaaagagtaa
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