Lates calcarifer (barramundi perch): 108894540
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Entry
108894540 CDS
T04895
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108894540
03036 Chromosome and associated proteins [BR:
lcf03036
]
108894540
Enzymes [BR:
lcf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
108894540
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
108894540
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108894540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
Motif
Other DBs
NCBI-GeneID:
108894540
NCBI-ProteinID:
XP_018548743
LinkDB
All DBs
Position
LG16_LG22:complement(6020209..6031721)
Genome browser
AA seq
1615 aa
AA seq
DB search
MYSVLINAVLSSSPDYDRLFESLSWPSESWPGTERVEALTAFIEGLGPLLADSDTTPLTA
AKRRSIRDKIESVIWAQCLPLLSRIPAEAGEGVRCRESTAAACRLVSVCVPLCEEAVPGR
VALSVLPSLQLSEEELPGPGRLSVEVASEVMAALIPSLSADEQLALTTVSSALSCIKTLP
DALVSKITIRLLLSFLNCCSGAKLKSILKLVLEDLCSWHCTDRTPVVTERALLCLTAMSD
HLLKPHSPPPSSEPDPRLSLQFWRMVQDGLTHRDSVSRKRALYLLKRCVALSEEEQVNCP
LSPSVEDETLFKWAPDKSKLLREFWEDYALVMETLEENQVHVVRPVLNRIDTLIQTTVND
SQASGQGLFHPSWLLCVYQRMFHSENKSLMREGVCHLLELQVLQQPAFALAFSQFIVGPF
MDVLSETSLFHRSVEQSVGECPELGAKLQVFMATFFSSLPSEHRGCVLLQLIQQLGSKHW
CAVPLLFLSQALSKLPPSPLLGIDGFAALREVLRCTMVTHQVLLRGAAQCFLLNTALCLT
EVNAVTLDDVFSFLMHFRADESLRRGTQIWNQLCTWLSDNEARFKPRIMEDGAVTKKETV
RGYVQDEIHAYLRVPVSTGQTERLPDSKEADKLARAILLCVDMEKSQPSAEVGNTLESLL
SPLLDTLSRVSTNIYLPLRKSDKSLQLVLRLFQLGGTLSCQQADGVMVAMEKLIFKLVDP
IQEFILRRLCGELQELFDVERAELYLSVLRQLVVMYSSTPLHHKKIQQNGFPKLIKHSLK
VLQEPSQQIPSVANQVARAVAMASMATICGLVEHEVIGIQSETISVLKALNDYFYSSLLT
SSQSQSSLGNFNKRLLKPLTGDCSSDLGVLGPLLQDWGRIAANFMRDQWICLSFLIKMVG
IPEISRAPDTLKAALSCSVEALALLPSDLVLPVLSFMETVLPQLVVDEEALCMEAVTLSW
ELVQGLSNNAHDFWPSLKGFVTLAFHRKLLELTHTQALTLLATLKQIATELIELSESKSG
VFGVLLQHCCQTWLPTDQGSSDQADTVFSSVFSHINILTEACVYGPVFRRDQRLIQDVQT
YVEQLGEQCAGNVIVTSDNRDDQLPRTCVLTFLSRLDSSNLQHERVIEELVLALLKKDND
ISKSKVRYYSNSLQHRVKNRVWQTLLLLLPKLREEFVATLLKHVYAAGFCSNQASVKYLI
EWMMILILVHYPQHMDSFWGCFNMDHEKTKTSICTFLSVLVHFNVIMPNLKDKAEQLRKA
LDIILQWCFNHNFSVRLYALLALKRVWSLAEVQAEQEADAFGGLSTVIKACLNQAEAMQS
TGNANKNWIRIQEHFFFGAFHPVRDYSVETIFYTFPSLSELADDEWIPPWKFEKLSCFSK
SPSFPLRNSAPDLSQLQPGDWIQQDKSEQDKEERWAEVQKKITPWRLGIQEQEPELQLVP
PQRAARLGKLHGALLVVASLIDKPTNLGGLCRTCEIFGASALVLDSLRHVTDKHFQSLSV
SSELWLPLLEVKPVELTDFLQVKKNEGYCIVGVEQTANSQNLQDYQFPEKTLLLLGNERE
GIPANLLQMLDVCVEIPQQGVIRSLNVHVSAALLIWEYTRQHLASASVEVNSKHS
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtattccgttttaattaacgcggtcttatccagctctcctgactatgaccgtttgttt
gagtctctgtcctggccgagtgagtcgtggccggggacggagcgggtggaggcgctgacg
gctttcattgaagggctcgggccacttttggcagactcggacacgactccacttacagcc
gcgaaaagacgaagtattcgagataaaattgagtcggttatttgggcgcaatgtctgcct
ctcctctccagaatacccgcagaagccggtgagggtgtgcggtgcagagagagtacagcc
gctgcctgccgacttgtgagcgtctgtgtcccgctgtgtgaggaggcagtaccggggcgg
gtggctctgtccgtcctgccgtcgctccagctgtcagaggaggagctacccggtccggga
cgactcagtgtggaggttgcaagcgaagtcatggctgctctcataccttctctgtcagcg
gatgaacagctcgccctcaccaccgtgtcatctgccttgtcctgcatcaaaacactccct
gatgcattggtctccaaaatcacaatcaggcttctcttgtcgttcttaaactgctgcagt
ggtgcgaagttaaaaagcatcctcaagttggtcctggaggatctgtgcagctggcactgc
actgaccgcacacctgtggttacagagcgggcactgctatgtttgaccgccatgtcagac
cacctgctaaaacctcacagccctcccccctcctctgagcccgaccctcgtctgtccctt
cagttctggaggatggttcaggatggtctgacgcacagagacagcgtttcacgtaagagg
gcgttgtacctgctgaaaaggtgtgtggccctgtcagaggaggagcaggtgaactgtcct
ctctctccatcagtggaagatgagaccttgttcaaatgggcccccgacaagagcaagttg
ctcagagagttctgggaggattatgcgctggtgatggagaccctggaggaaaaccaggtt
cacgtcgtccggccagttctaaaccgaatagacacattgatccaaacaacagtgaatgat
agtcaagcttcaggtcaaggcctcttccacccctcctggctgctctgtgtgtaccagcgg
atgttccacagtgagaataaatccttaatgagagagggagtgtgtcatcttctcgagctg
caggtcctccagcagccagctttcgctttggccttttctcagtttattgtcggccctttt
atggatgttctgtctgaaacttcactcttccacaggtcagttgagcagagtgtaggagaa
tgtcctgagctgggggctaaactccaagtcttcatggccaccttcttcagtagcctaccc
tcagagcatagaggttgtgtgttgctgcagctgattcagcagctgggctctaagcactgg
tgtgcagtacccctactcttcctctcccaggctctatccaaactcccccccagtccactg
ctggggattgatggattcgctgctctaagggaggtgctgcgctgcaccatggtcacgcat
caagttttgttaagaggagctgctcagtgcttcctgctgaatactgccctctgtctcaca
gaagtgaatgcagtaaccctagatgatgtctttagtttcctgatgcatttccgtgcagac
gagtcactgcgtagagggacacagatctggaatcagttgtgcacctggctatcagacaat
gaagctagattcaagcccaggattatggaggatggtgctgtcacaaagaaagaaactgta
aggggctatgttcaagatgagatacacgcctatctccgagtcccagtgagcacaggtcag
accgaaaggttacctgactctaaagaggctgataagttggccagggctattctgctgtgt
gtggacatggagaagagtcaacctagcgcagaggtcggtaacaccctggagtcattattg
tctcctctgctggacaccctgagcagagtcagcaccaatatctacctacctctgcgtaag
agtgacaagagcctacagcttgtgctgcgattgttccagcttggaggaacactaagttgt
cagcaagctgatggcgtgatggttgccatggagaagctaatttttaaacttgtagatcca
atccaggagtttatcttgaggcggctgtgtggggagctgcaggagctgtttgacgtggag
cgggcagagctgtatctgagtgtcctgaggcagctggtggtcatgtacagttctacacca
ctacatcataagaaaattcagcagaatggtttccctaaactcatcaaacacagccttaag
gtccttcaagaaccaagccagcagatcccctctgtggcaaatcaggtggctagggcagtt
gctatggcatccatggccacaatttgtgggcttgttgaacatgaagtgattggcatccaa
tcagagaccatttctgttctgaaagccctaaatgactacttctatagctcactgctaact
tcctcacaaagtcagtcatctctgggaaacttcaataaacgcctgctgaaaccactgacg
ggagactgttcaagtgatcttggagtgctaggtcctctgctacaggactgggggcgtatt
gccgccaattttatgcgggaccagtggatttgtctgagcttcctgattaagatggttggg
attcctgagatttccagagcaccagatactctcaaggctgctctgagctgcagtgtggag
gccctggcactgctgcccagtgacctggtgctgcctgtgctcagctttatggagacagtg
ctgccacaattagtagttgatgaggaggcgctctgtatggaggctgtgactctgagctgg
gagctggtgcaaggactgagcaataatgcccatgacttctggccgtccctgaaaggcttt
gtcaccttggccttccaccgcaaactgctggagctgacacatactcaggctctgacactt
cttgccaccttgaagcagattgccactgagctgattgagctgtctgagtcaaaaagtgga
gtatttggagtgctgcttcaacactgctgtcagacgtggttgcccacagaccaaggcagc
agcgaccaggctgacaccgtgttttctagtgttttcagccacatcaacatactcactgag
gcttgtgtctacggaccagttttcagaagagaccaacggctaatccaggatgtccaaaca
tatgtggagcagctcggtgaacagtgtgctggtaatgtcattgttacaagtgataacagg
gatgatcagttgccgcgcacatgcgtactaactttcctcagccgtttggattcctctaat
ctacagcatgaaagagtgatagaggaactagtcctggctttgttgaaaaaggataatgac
atatcaaagtcaaaagtgcgttattatagcaactccctgcaacatcgtgtcaaaaacaga
gtatggcaaacactgctactgttgctgcccaaactcagagaggagtttgttgccactttg
ctgaaacatgtgtatgcagctggattctgcagtaaccaggcctcagtcaaatacctgatt
gaatggatgatgattctgatcctcgttcactatccgcaacacatggacagcttttggggc
tgtttcaacatggatcatgaaaagacgaagacaagcatctgcaccttcttgtcagtcctg
gtgcatttcaatgtcatcatgcccaatcttaaagataaggcagagcagttgcgtaaagcg
ctggacatcatcctgcagtggtgtttcaaccataacttcagtgtgcgcctgtatgcttta
ctggccctaaaaagggtgtggagcttggcagaagttcaggcagagcaggaggctgatgct
tttggagggctttccactgtgattaaggcctgtttgaaccaggctgaggccatgcagagc
actggaaatgccaacaaaaactggataagaattcaggagcacttcttctttggtgcattt
catcctgtcagggattacagtgttgagaccatattctatacctttcccagtctgtcagag
ttggcagatgatgaatggattccaccttggaagtttgagaaactgtcgtgtttctctaaa
agtccatcttttcctttgagaaattctgctcctgacctgagccagctccagcctggagac
tggatccagcaagacaaaagtgagcaggataaggaggagcgctgggctgaggtgcagaag
aagatcaccccctggaggttggggatccaggagcaggagcctgaacttcagttggttcca
ccacaaagggctgctcgactaggcaaactgcacggcgccctgctggtggtagcctcactt
atagacaaacccaccaatttaggaggtctatgcaggacgtgtgagatatttggtgccagt
gctctggttctggacagcctccgccatgtcactgacaaacactttcagtccctgagcgtc
tcatctgagctatggcttcctctgttagaggtgaagccagtggagctcactgacttcctg
caggtaaagaagaatgaagggtactgcattgttggagtggagcagacagccaacagtcag
aatctccaggactatcagttccctgagaagaccctgttacttctgggcaatgaacgagaa
ggtattcctgccaacttgctccaaatgttagatgtttgtgtggagatccctcaacaaggg
gtcatccgctccctcaacgtgcatgtgagcgccgccctgctgatttgggaatatacacgg
caacatcttgcttctgcttcagtagaagtcaactcaaaacacagctga
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integrated database retrieval system
