KEGG   Lates calcarifer (barramundi perch): 108895138Help
Entry
108895138         CDS       T04895                                 

Gene name
lig3
Definition
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03410  Base excision repair
Module
lcf_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    108895138 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108895138 (lig3)
Enzymes [BR:lcf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108895138 (lig3)
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     108895138 (lig3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme MDFI
Motif
Other DBs
NCBI-GeneID: 108895138
NCBI-ProteinID: XP_018549295
LinkDB All DBs
Position
Unknown
AA seq 1013 aa AA seqDB search
MQRSLILLAPKTACLRLQTPRALVRSQQLLKACRSFPVSSCFGHQLPPPVYVLNCSRAIC
TLSIVSHNHSLLQNYLPRYSPHRCFSNEPDMAEQRFLVEYAKRGTAGCKKCKDKIQKGIV
RIGKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKDLI
NKHVSDLMAKVNASPKKKVQGKLNTTGQLMGPPADPSVNAPRKFSGFTAAKAGTSSSSGP
SSSSPAKASQGSALSSQLCDPQHKDCLFREFRKLCAMVAENNSYNAKTQIIEKYLKKGSA
GDKFHGDLFLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFRCDQDAMVRDLEQGDVSETVR
MFFEESKSFPPAAKSLLTIQEVDASLTRLAQLTKEDEQQTELEDIAKKCTSNDLKCIIRL
IKHDLKMNAGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGPRKLLTVEA
SLMTPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDNFSYFSRSLKPVLP
HKVAHFKEYIPQAFPGGNSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAKVCLFVF
DCIYFNGVSLMERPLRERRKFLHDNMVEVPNRILFSEMKHVTRAADLADMITRVIREGLE
GLVLKDIKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGC
YDPDSKKWCTVTKCSGGYDDATLARLQKELDVIKISKDPSKIPGWLKIIKNYYPDFIIRD
PEQAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLKELFRISKEN
CDFKVTAGPSTSNDDKGSSGGDSGGNSPPSSSHRGPPPKKTSNSAPPKPKVVKSQPRTPG
SEAPVAKKAKKSESVQSNGQTKTKATSQLLEPRNDKTLLDIFSGVKLFLPVSVQDFDKLR
RYFVAYDGDLVPDYDTASATHTLAEPEENSQAQKVTPSWIWECIRKRRVVPPC
NT seq 3042 nt NT seq  +upstreamnt  +downstreamnt
atgcagagatctcttattttgttagctcccaagactgcctgtctacgcctacaaactcct
cgagcacttgttaggagtcagcaactcttgaaagcgtgtagatcctttcctgtctcttca
tgctttggacatcaactacctccacccgtgtatgtgcttaattgttccagggcaatctgt
accttgtccatagtatcccataatcacagcctcctccaaaactatcttcctcggtattct
ccgcatcggtgtttctccaacgagccagatatggcagagcagaggttccttgtggaatac
gccaaacgtggcactgcaggttgtaagaaatgcaaggacaaaatccagaagggcatagta
cggatagggaagattgtgccaaaccctttcagtgagtctgcaggggagatgaaagagtgg
tatcatgtgaagtgcatatttgagaagctggagagggcaagagccaccacgaagaagatt
gaggacatcacggatctggaaggctgggaggagctgcaggatgaagacaaggatctcatt
aacaaacatgtttcagacctaatggccaaagtcaatgcaagtccaaagaagaaggtgcag
ggcaaactgaacaccacaggccagctgatgggtcctcctgctgacccatctgtcaacgct
ccacgcaagttttcaggcttcactgctgcgaaggctggcacctccagcagctcaggacca
tcatcctcttcccccgccaaagccagccaaggcagcgctctgtcctcccagctctgtgac
ccccagcacaaggactgcctcttcagagagtttcgcaagctctgtgctatggtggcagaa
aacaacagctataatgccaagacacagattattgagaagtatctcaagaagggctcagct
ggagataagttccacggagatcttttcctgaccgtgaaactgctcttgccaggcgtcata
aaaagtgtctacaacctcaatgacaagcagattgtaaaactcttcagccgcatattcagg
tgtgaccaggatgccatggtgcgcgatctggaacagggcgatgtatctgagacagtgagg
atgttcttcgaggagagtaaatcatttcctccggctgccaagagcctactgaccatccag
gaagtggacgcatccctgacccgcctcgcccagctgaccaaggaggatgagcaacagact
gagctggaagatattgccaaaaaatgcaccagcaatgacctgaaatgcatcattcgactt
attaagcatgacttgaagatgaatgccggtgcaaaacatgtcctggatgctgtggatcca
aatgcttatgatgcctttaaggcctcacgtaatctgggtgatgtgatcgaacgggtgttg
aggaatcagcaggaggcgtctaatggttcaggacccaggaaactcctcactgtggaggcc
tctctcatgacccctgttcagcctatgttggcagaggcatgtaaatccatcgagtacgcc
atgaagaaatgccccaacgggatgtactcagagatcaagtacgatggagagcgtgtgcag
gtccataagaacggagacaacttcagctacttcagccgcagcctcaaaccagtgttacca
cataaagtggcccatttcaaagagtacatccctcaggcttttcccggaggcaacagtatg
atactggacgctgaagtcctcctaattgacacaaagaccagtaaacccctgccctttggg
accttgggcgtacacaagaaagcagcctttcaagatgccaaagtgtgcctttttgttttc
gactgtatctacttcaatggcgtgagcctcatggagaggccgctgcgtgaacgcaggaag
ttcctacatgacaatatggtggaagtccccaacaggatcttgttctcagagatgaaacat
gtcactagggcagcagatctggctgatatgataactcgtgtcatcagagagggacttgag
ggtctggtgctaaaagacataaagggcacctatgaaccaggaaaacgccactggctgaag
gtgaagaaagactatttgaatgaaggtgcgatggcagacacagctgacctggtggtgctg
ggggccttctacggaaaaggctcaaacgggggcatcatgtccagttttctgatgggttgt
tatgacccagactctaagaaatggtgcacagtcaccaagtgctctggaggctacgatgac
gccaccctggccaggctccagaaggagctggatgtgatcaaaatcagcaaggatccaagc
aaaatcccaggctggttgaaaatcatcaagaactattatccagatttcatcatccgcgat
cctgagcaagcacctgtctgggagatcacaggtgcagagttttccaaatcagaaatgcac
actgctgatggcatctctatccgctttccccgcatgacgcgcatccgtgatgacaaggac
tggaagactgccaccaacttgcaccagcttaaagagctgtttcgcatatcaaaggagaac
tgtgactttaaagtgacagccggaccgtctacatctaatgatgacaagggctcatcagga
ggggacagcggaggaaactccccaccgtcctcatcccacagaggtcctcctcccaagaag
accagcaacagcgctccacctaaaccgaaggtggtgaaatctcagcctcgcacccctggc
tcggaagcaccagttgccaagaaggcgaagaagagtgaaagtgttcagagcaacggacaa
accaaaacaaaggcaacctcgcaactgctggagccaagaaatgacaagactctgctggac
atcttcagcggggtgaagcttttcctgcccgtctcagtgcaggactttgacaaactgagg
cgctactttgtggcgtatgacggagacctcgtcccggactatgacaccgcctcagccaca
catactctggctgaacctgaagagaacagccaggcccagaaggtcacacccagctggatc
tgggagtgtatccgcaagagacgcgttgtacctccctgttaa

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