Lates calcarifer (barramundi perch): 108900082
Help
Entry
108900082 CDS
T04895
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108900082 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108900082 (smfn)
03009 Ribosome biogenesis [BR:
lcf03009
]
108900082 (smfn)
Messenger RNA biogenesis [BR:
lcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
108900082 (smfn)
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
RNases
108900082 (smfn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
108900082
NCBI-ProteinID:
XP_018556440
UniProt:
A0A4W6DW23
LinkDB
All DBs
Position
Unknown
AA seq
282 aa
AA seq
DB search
MPVCLRTSAWALAFSDFLCRKRQLVLRSTKAAHHSNCIGVFQKNVQPSRIINPFTAPRTG
PGLTPTFGSGFDVQVSRRISMSSSAMSQRMVWVDLEMTGLDIEKDQIIEMACIITDSDLN
VLAEGPNLIINQPDELLDGMSEWCKEHHGKSGLTQAVRDSKITLEQAEYEFLSFVRQHTP
PGQCPLAGNSVHADKRFLDKHMQQFMYHLHYRIIDVSTIKELCRRWFPEEYKMVPHKTAS
HRALDDIRESIKELQYYRANIFKSSTEEKKRKIVENGGSTKS
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgtgtttgcggacctcagcatgggccctcgctttctcggactttctctgcagg
aagagacaactcgtcctccggtccacaaaggcagcacatcactcaaactgcatcggtgtt
tttcagaaaaacgtacagcctagtcgtataataaacccctttaccgcaccgcggacaggc
cccggccttactcccacattcggctccggttttgacgttcaggtgtccagaagaatcagc
atgtcgtcctccgcgatgtcccagagaatggtttgggtggacttggaaatgacaggcctt
gacattgagaaggaccagatcattgaaatggcatgcattatcacagactctgacctgaac
gttttggctgaggggcccaacttgataattaaccagccagatgagttgctggacgggatg
tcagagtggtgtaaagagcatcatggaaagtcaggactgacccaggctgtacgggacagt
aaaatcaccctggaacaagcagagtatgagttcctgtcctttgtcagacagcacaccccg
cctggacagtgtcctcttgctggtaactctgtgcatgcagacaagaggttcctggacaag
cacatgcagcagtttatgtatcaccttcattacagaatcattgatgtcagcaccatcaag
gagctttgcagacggtggtttccagaggagtacaagatggtacctcacaagacagccagc
cacagagccttggacgacatacgggagagcattaaagagctgcagtattacagagccaac
atcttcaaatcatcaacagaggagaagaagcgtaagattgtagaaaatggaggcagcacc
aaaagttag
DBGET
integrated database retrieval system