KEGG   Lates calcarifer (barramundi perch): 108900082
Entry
108900082         CDS       T04895                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    108900082 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108900082 (smfn)
   03009 Ribosome biogenesis [BR:lcf03009]
    108900082 (smfn)
Messenger RNA biogenesis [BR:lcf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     108900082 (smfn)
Ribosome biogenesis [BR:lcf03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    108900082 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like
Other DBs
NCBI-GeneID: 108900082
NCBI-ProteinID: XP_018556440
UniProt: A0A4W6DW23
LinkDB
Position
Unknown
AA seq 282 aa
MPVCLRTSAWALAFSDFLCRKRQLVLRSTKAAHHSNCIGVFQKNVQPSRIINPFTAPRTG
PGLTPTFGSGFDVQVSRRISMSSSAMSQRMVWVDLEMTGLDIEKDQIIEMACIITDSDLN
VLAEGPNLIINQPDELLDGMSEWCKEHHGKSGLTQAVRDSKITLEQAEYEFLSFVRQHTP
PGQCPLAGNSVHADKRFLDKHMQQFMYHLHYRIIDVSTIKELCRRWFPEEYKMVPHKTAS
HRALDDIRESIKELQYYRANIFKSSTEEKKRKIVENGGSTKS
NT seq 849 nt   +upstreamnt  +downstreamnt
atgccggtgtgtttgcggacctcagcatgggccctcgctttctcggactttctctgcagg
aagagacaactcgtcctccggtccacaaaggcagcacatcactcaaactgcatcggtgtt
tttcagaaaaacgtacagcctagtcgtataataaacccctttaccgcaccgcggacaggc
cccggccttactcccacattcggctccggttttgacgttcaggtgtccagaagaatcagc
atgtcgtcctccgcgatgtcccagagaatggtttgggtggacttggaaatgacaggcctt
gacattgagaaggaccagatcattgaaatggcatgcattatcacagactctgacctgaac
gttttggctgaggggcccaacttgataattaaccagccagatgagttgctggacgggatg
tcagagtggtgtaaagagcatcatggaaagtcaggactgacccaggctgtacgggacagt
aaaatcaccctggaacaagcagagtatgagttcctgtcctttgtcagacagcacaccccg
cctggacagtgtcctcttgctggtaactctgtgcatgcagacaagaggttcctggacaag
cacatgcagcagtttatgtatcaccttcattacagaatcattgatgtcagcaccatcaag
gagctttgcagacggtggtttccagaggagtacaagatggtacctcacaagacagccagc
cacagagccttggacgacatacgggagagcattaaagagctgcagtattacagagccaac
atcttcaaatcatcaacagaggagaagaagcgtaagattgtagaaaatggaggcagcacc
aaaagttag

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