KEGG   Lates calcarifer (barramundi perch): 108900637Help
Entry
108900637         CDS       T04895                                 

Gene name
lig4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    108900637 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108900637 (lig4)
Enzymes [BR:lcf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108900637 (lig4)
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     108900637 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT_2 BRCT RNA_ligase mRNA_cap_enzyme APG17
Motif
Other DBs
NCBI-GeneID: 108900637
NCBI-ProteinID: XP_018557305
LinkDB All DBs
Position
Unknown
AA seq 911 aa AA seqDB search
MEGTSKSDAAAQPSVAAQVPFLHLCTTLEKIQKAKFRPDKSKILGDFIESWRKFHSALHK
DSPKTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAVNNDNKQKDLVRKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNLSVSL
SEVSIGIFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSNVVNCILDGEMMAYNPTTENFMQKGSKFDIKRLM
EDSELQTCFCVFDVLLVNDQKLGKETLKKRFETLQTVFTPLKGRIHLVPKTDARTMQEVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMEELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIVQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRNKASGKLASRHLYITDDDGPQKKKRKLVPKTKKVVALIDHCKPQDLSGVTKE
TDMFEDVEFCILNGTQDHSKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLMLS
NQHDVVWASWLLECLDQKEVVPWQPHHMIHMSPSTKEHFAKEYDSYGDSYFVDTDEQQLR
EVFGRIGSRDSSVAVNVEQVEQRYSWADLPTSMFRPFTAYMDSYANIRDPKIVIPATCLD
IRALEFRYHGGTVVQKLEEGVSHVIISEETRLLDLRTLRRRFSRKFKIVRDSWVTDSIKA
GYLMNDDSYLV
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atggagggaacttccaaaagtgatgctgctgctcagccatctgttgcagctcaggttcct
ttccttcacctgtgtaccactttagagaaaatccaaaaggctaaattccgtccagataaa
tccaagatccttggggatttcattgagtcatggaggaagtttcattctgctctccacaaa
gacagtcccaaaacaacagactctttctacccggctatgcgcctcatagttccccctttc
gaacgagagcggatggcatatggcatcaaagagaatatgttagctaaactctacatcgat
gtattaggcctcccaaagaatggcccagaggccaataaactgttgaactaccgagctcca
actacatcccaaggagaagctggagactttgctggcatggcgtattttgtgctgaaaaaa
cgctgcaccagccaaggaaacctcagtatcaaagaagtcaatgactttctggactctgtg
gctgtcaacaatgacaacaagcagaaggatcttgtgagaaaaagtctgctgcacctcatc
acccagagctcagctcttgagcaaaaatggctcatcagaatgattctgaaggatatgaag
ctcgggatcagcaaggaaactgttctccaggtcttccacccagatgctgcagagctctac
aatgtcaacacagacttgaacaaggtgtgccagcagctccacaacctgtctgtgtcttta
agtgaagtctccattggaatattttctgccttcaagcccatgttagcagctgtggctaac
atccgcaatgtggaaaaacagatgggcaacagccctttttacatccagaccaagctggat
ggggagcgtattcagctgcacaaagatggagatgtctacaaatactttagccgaaatgct
tttgaatacacgcagcagtttggaggatccccactggagggctcactgactccttacatc
cacaatgtttttaaaagcaatgttgtgaactgtatcctcgatggtgagatgatggcgtac
aacccgaccacagagaacttcatgcagaaagggagcaagtttgacatcaagaggctgatg
gaagactctgagttacaaacgtgcttctgtgtgtttgatgttttgttagtcaatgaccag
aagcttggaaaggaaacgctcaagaagcgttttgagacccttcagacagttttcacccca
ctcaagggaaggatacacttggtgccgaagactgatgccagaaccatgcaggaggtggtg
aacgcactcaatgacgccatagacaacagagaagaggggataatggtgaaggatcctttg
tccatctacaaacctgacaagcggggggagggctggctgaaaataaagccagaatacgtt
gatggcttgatggatgagcttgacctgttgattgttggcggctactgggggaaagggaga
cggggtggtatgatgtcccatttcttatgtgctgttgctgaagcaccaaagcctggagag
aaaccttcagttttccacacactctgccgcatcggctctggctataccatggaggagttg
tatgaccttggtttgaagctcgccaagcattggaaagtctaccgaaagaacgacccacca
gcatctatcctttgtggaacagagaagccagaggtctacatcgaaccttgcaactctgtc
atcgtccaggtcagggcagctgagatagtcggcagcgacatgtacaaaaccaactgtacc
cttcgcttccccaggattgagaagatccgcgaagacaaggagtggcaccagtgcatgact
ctggcagagctggatcagttccgcaacaaggcgtcgggcaaactcgcctcacggcacctt
tacatcactgatgacgatggaccgcagaagaagaagcgcaagctggtacccaaaaccaag
aaggtggtcgcgctcatcgaccactgtaagcctcaggacctttccggggttaccaaggag
acagatatgtttgaagatgtggagttctgcatcctgaatggcactcaggatcactccaaa
gccgagctggaaaagggggtggccaggtgtggaggaatcgtggttcaaaacccaggacgg
gacacctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacctgatgttgtcc
aaccagcacgatgtggtttgggcctcctggctgctggagtgcctggaccagaaggaagtg
gtcccatggcaaccacaccacatgatccacatgtcgccctccaccaaggaacactttgcc
aaggagtacgacagctacggcgacagctacttcgtggacacagacgagcagcagttgcgg
gaggtgtttggccggatcggcagcagggactcatcggttgccgtgaacgttgaacaggtg
gagcagcgttacagctgggctgaccttcccaccagcatgttcagacccttcacagcttac
atggacagctatgctaatataagagaccctaaaattgtcatacctgccacctgtttggac
atcagggcgctggagtttcgctaccatggaggcacagttgtgcagaagttggaggaagga
gtctctcacgtcattatctcagaggaaacaagacttctggatttacggactctgaggcgc
cgcttttcaaggaagtttaagattgtaagagactcatgggtgactgattcaatcaaagca
gggtatctcatgaatgatgatagttacctggtttga

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