Lates calcarifer (barramundi perch): 108900945
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Entry
108900945 CDS
T04895
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108900945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108900945
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108900945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_14
Motif
Other DBs
NCBI-GeneID:
108900945
NCBI-ProteinID:
XP_018557743
UniProt:
A0A4W6BXF8
LinkDB
All DBs
Position
LG21:complement(14026882..14049013)
Genome browser
AA seq
1079 aa
AA seq
DB search
MSYRYGGGGGGGGGGRRGRRGGRGYRDGSGERRGRGGDGGGFRGHSSDFDQDSGGGGNQD
RHPPHLKGREIGLWYARYGAVRRKQADRRSRAVVQMDEAREQHITKLLNSVQSDQPSTGR
DSRDGRASTSGNWQTEAKSSGHCYFDGDLPEEEKHIIEVKSEEEEEEVCSVQRTSSHKSQ
RYFTQVVAKDEPPDNWDEEEQQQPQLQQEEKEKLRRKDKDLEFLFQEVVRDNSLDDYLKR
DLQNKKSDPKYKEMLKFREKLPSYGKKEELVELINSNRVLVVSGETGCGKTTQVTQFILD
DYINRGMGSLCRVVCTQPRRISAISVAERVAAERAESVGNGNSCGYQIRLQSRLPRRQGS
VLYCTTGIILQWLHSDPLLSSVSHLVLDEIHERNLQSDVLLIIVKDLLKLRDDLKIILMS
ATLNAEKFSKYFDNCPMIHIPGLTFPVEEFLLEDIVEMTRYHPQNQDRRSSWKRGFWQGR
NSRPEKEEKEAEYKESWPCYARTLRGRYSDNTIETLEMLDNDDKIDLELVMALIHHIVRY
EEEGAILVFLPGWDNISSLNDLLMAQPMFRSDRFVIIPLHSLMPTVNQTQVFKRPPPGVR
KIVIATNIAETSITIDDVVYVIDGGKIKETNFDTNNNISTMTAEWVSLANAKQRKGRAGR
VCPGKCYHLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILKLGYIARFLEKALDPPTDQ
AVSLAIKNLVDLNALDCSENLTALGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASL
SFKDPFFIPLGKEKMADMRRKTLSRNSKSDHLTIVNAFQGWEEAKQRGARYEREYCWDNF
LSANTLQMLHNMKGQFAEHLMHAGFVSSKDPRDPKSNVNSDNEKLIKAVIVAGLYPKVAM
IRPSHSKKRPGVKVYTQADGKVCIHPKSVNAEETEFNYTWLIYHLKMRTSSIFLYDCTEV
SPFSLLFFGGDITIQKDEDQETIAVDRWIVFRSPARIAHLVKSLKKELDSLLEEKIRNPA
PVDWQNRQSKDCAVITAIIDLITTQEKPAGSTKGHGRTWASAPRGQHIYFNDEDDDDDD
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgagttataggtatggtggtggtggaggtggaggtggaggtggaagaagaggcagaaga
ggaggtcgaggctacagagatgggagcggagaaaggaggggcagaggaggagatggagga
ggtttcagagggcatagttccgactttgaccaggacagtggaggaggtggaaatcaggac
cgtcatcctccgcacctgaagggccgtgagattggtctgtggtacgcaagatacggagcc
gtgaggaggaaacaggctgaccgtagatcgcgggcggtggttcagatggacgaggccaga
gagcagcacattaccaagctgcttaactctgtccagagtgaccagcctagtacagggaga
gacagcagggacggaagagcctctacatctggcaactggcagacggaagccaaaagcagt
ggtcattgttactttgatggggatctgcctgaagaggagaaacatattattgaggtcaaa
tctgaagaagaagaggaagaagtttgttcagttcaaaggacatcatcccacaaatctcaa
cgttactttactcaggtagttgctaaagatgaacccccagacaactgggatgaagaagag
cagcagcagccgcagctgcagcaggaggagaaagagaaactgagaaggaaagacaaggat
ctggagttcttatttcaggaagttgtcagagacaattcactagatgactacttaaagaga
gatctgcagaacaagaaatctgatccaaagtacaaagaaatgttgaaattcagggaaaaa
ttaccatcttatgggaaaaaagaggagctggtagagctgatcaactctaaccgtgtcctg
gttgtgagtggggagacagggtgtggaaagaccactcaggtcacccagttcatcctagat
gactacattaacagaggcatgggctcgttgtgccgagtggtctgcacgcagcctcgtcgc
atcagtgccatctcggtagcagagcgtgtagcagcagagagggcagaaagtgtaggcaat
ggaaattcttgtggttaccaaatccgcctacagagccggttaccacggagacaaggttcg
gtcctgtactgtacaacaggcattattcttcagtggcttcactcagacccattgttgtcc
agtgtcagtcacttggttctggatgagatccatgagaggaacctgcaatcagatgttttg
ctcataatcgtgaaggacctactcaagcttcgagacgacctcaagatcatcctcatgagt
gccacgctcaacgcagagaagttttctaaatattttgacaactgtccaatgatccacatc
cccggtttgacgttcccagtggaagagttcctacttgaggacattgtagaaatgaccagg
tatcatccccagaatcaggaccgtcgctcctcatggaagagaggcttttggcagggtcgc
aactccagacctgagaaggaggagaaagaggctgaatataaggagagctggccttgctat
gcacgcacgctccggggcagatactctgacaacaccattgagacactggagatgttggac
aatgatgacaaaatcgacctggaactggtcatggcactgatccatcatattgtgcgctat
gaggaggaaggagcaatcttggtgttcctgcctggctgggacaacatcagcagcctcaat
gacctgctaatggctcagccgatgttcagatcagatcggttcgttatcatcccgttgcac
tccctcatgcccaccgttaatcagacacaggtgttcaaaaggcctcctcccggagttaga
aagattgtgatcgctactaatatagctgagaccagcatcaccatagatgatgttgtgtac
gtgatagatggggggaagattaaggaaaccaactttgacaccaacaacaacatcagcaca
atgacggccgagtgggttagcctggccaatgccaaacagaggaaaggacgtgccggcaga
gtgtgtccagggaagtgctatcatctgtacaatggtcttagggccagcctgctggacgcc
tatcaattacccgaaatcatgaggacaccactggaggagctctgcctgcagatcaagata
ttgaagcttggatatatagctcgattcctggagaaagccctggaccctcccacggaccag
gctgtcagtctagccatcaagaacctggtagacctgaatgccctagactgttcagagaat
ctgacagcgctgggtttccacctggctcgtctgcctgtggagccacacattggcaaactc
atcctgtttggagctctgttgggctgcctcgaccccgtgctcaccatcgctgcctcgctc
agcttcaaagaccctttcttcatacccctgggtaaagagaagatggcagacatgaggaga
aagaccctgtccagaaactccaagagtgaccacctcactattgtcaatgcctttcagggc
tgggaggaagcaaaacagcgtggtgccaggtatgagagggagtactgctgggacaacttc
ctgtctgccaatacactccagatgctgcacaacatgaagggtcagtttgctgaacatctg
atgcatgcaggctttgtcagcagcaaggaccccagagatcccaaatctaatgtcaactca
gacaatgagaagttaatcaaagcagtgattgtagccggtctgtaccctaaggtggccatg
atcagaccatctcacagcaaaaagaggcctggggttaaagtgtacacccaggctgatggg
aaagtgtgtatccacccgaaatctgtcaacgccgaggagactgagttcaactacacatgg
ctcatctaccacctcaagatgagaacgagcagtatcttcctctatgactgcaccgaggtg
tccccattctcgctgctgtttttcggaggagacatcaccatccagaaggacgaagaccag
gagaccattgcagtggaccggtggatcgtcttcagatccccagcacgcatcgctcacctt
gtcaagagtttaaagaaagagctggattctctactggaggagaaaattcgtaacccagct
cctgtggactggcaaaaccgtcagtccaaagactgtgctgtgatcacagccatcatagac
ctcatcaccacccaggagaagcctgcaggcagcactaaaggccatggcagaacgtgggcg
tctgccccgagagggcaacacatttacttcaatgacgaggatgatgatgacgatgattag
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integrated database retrieval system
