Lates calcarifer (barramundi perch): 108902984
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Entry
108902984 CDS
T04895
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108902984 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108902984 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108902984 (mgrn1b)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108902984 (mgrn1b)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108902984 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
108902984
NCBI-ProteinID:
XP_018560566
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Position
LG11:7282066..7291579
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AA seq
549 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDTPVEEGGKPKVQYGV
EFTFDADARVAITLYCQAFEEFSNGMAVYSPKDPSMASETVHYKRGVSQQFSMPSFKIDF
SEWKEEDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTMDHDEHSSTDSVPP
GFEPISLLEALNGLRSVSPAIPSAPLYDEINFSGGLGGDSRQLSSPEHLSDGSLQKSKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQPHTLLSSSPAPTDATATEDVAESLSPDDEDR
MHAGGDILQDCISEHSSLTKTESDPPGDLSLPGSSESTESLKSQSTNCSSQPLLCPTSSL
HMEDEHLNP
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggggtccatcctgagtcgcagaatcgctggtgttgaggatatcgatatccaggccaac
tcggcctatcgttttccacccaaatctgggaattattttgccagccacttcttcatggga
ggagaaaaattcgacacaccgcatccagagggatacctctttggagaaaacatggacctg
aattttcttggaaataggccagtgcagtttccatatgtgacacctgccccccatgagcca
gtgaaaaccctgaggagtctggtcaacatcagaaaggactctttgcgtttggtcaggtat
aaagatgactctgacacaccggtggaggagggtggaaaaccaaaggttcaatatggtgtg
gagttcacctttgatgctgatgctcgggtggccatcaccctctactgccaggcatttgag
gagttctccaatggaatggcagtgtatagcccaaaggatccatcaatggcctctgaaact
gtgcattacaagcgaggagtgagccaacagttctccatgccatctttcaaaatagatttc
agtgagtggaaagaggaagatctgaactttgaccttgatcgaggagtgttccccatggtt
atccaggctgtggttgatgaaggagatgattgccttggacatgctcatgtacttttggca
gcctttgaaagacatgttgatggcagtttctcagtcaagcctttgaagcagaaacaaatt
gtggaccgtgtgagctacctcttacaggagatctatgggattgagaacaaaaacaaccaa
gaaaccaagccatcagatgatgagaacagtgacaacagcaatgaatgtgttgtctgtctg
tcagacctgcgagacacactcatcctgccctgcagacatctgtgtctctgcaactcctgt
gcagacactcttcgttaccaggccaacaattgtccaatctgcaggctgcctttcagagcc
ctcctgcagatcagagctgtgaggaaaaagcctggagctctttctcctgtgtccttcagc
cctgttctggctcagactatggaccatgatgagcactcaagcacagactcggttcctccc
ggctttgagcccatctcgctgttagaggctctgaacggtctgcggtcggtgtctcccgcc
atcccgtctgcccccctgtacgatgaaatcaacttctcagggggtctgggtggtgacagc
agacagttgagctccccagagcatttaagtgatgggagtctgcagaaaagcaaagtcagc
aagtcacctgacagcacccttaggtctccatcctctcccatccaggaggaggatgaggag
aaactgtctgagatgtctgacgctcagccacacacactgctgtccagcagccccgccccc
acagacgccacagcaacagaggatgtggcagagtccctgtctccagatgatgaggacagg
atgcatgctggaggagacatcctgcaggactgcatcagtgaacacagcagcttgaccaaa
accgagagtgaccccccgggtgacctctctctgcccgggtcatcagagtcaacagaaagc
ctgaaaagtcagagcacaaactgctccagccagcctctcctgtgtcccacaagcagcctt
cacatggaagatgagcatctcaacccctga
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