Leptothrix cholodnii: Lcho_3963
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Entry
Lcho_3963 CDS
T00681
Name
(GenBank) Deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
lch
Leptothrix cholodnii
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_3963
Enzymes [BR:
lch01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Lcho_3963
DNA repair and recombination proteins [BR:
lch03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Lcho_3963
Prokaryotic type
Lcho_3963
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Herpes_glycop_H
Motif
Other DBs
NCBI-ProteinID:
ACB36217
UniProt:
B1Y8F1
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All DBs
Position
4440691..4442226
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AA seq
511 aa
AA seq
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MPASFSPLAPSAPAAAAHPHRQPAVIDTPVDAALVWLRRDLRLDDHAALHHALRSAKKVW
CAFIFDTTILDALPRADRRVEFIHHGIVELDGLLRAHGSGLIVRHGDPLQEIPAIAGALG
VQAVHINRDYEPAAVARDAQVRGALAHAGIALHSHKDQVIFETDEILTMAGSPFSVFTPY
KNAWLKKLDGYYLRAYPVQRHIGALAPVPAALDRGVPTLNDLDFLPTDMAARLHPGASGG
ATLLLDFLERIDRYADTRDFPAIKGPSYLSVHLRFGTVSIRQLARLAHERMVGGSRGAEV
WLSELIWRDFYHQILHHHPRVVTHCYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIIDA
AMLQLNRTGYMHNRLRMVVASFLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAAST
GCDAQPYFRIFNPISQSLRFDAEGRFIRRYLPQLADLSRAAIHAPWQAKPLELQAAGVKL
GRDYPMPVVEHAEARELTLARFAAVKGAAAR
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgccagcctccttttctcccctcgcaccgtccgctcccgccgctgcggctcacccgcat
cgccaaccggccgtgatcgacacgccggtcgacgccgcgctggtctggctgcgccgcgac
ctgcggctcgacgaccacgccgcgctgcatcacgcgctgcgcagcgcgaagaaggtctgg
tgcgccttcatcttcgacaccacgatcctcgatgcgctgccacgcgcggatcggcgggtc
gagttcatccaccacggcatcgtcgagctcgacggcctgctgcgcgcccacggcagcggc
ctgatcgtgcgtcacggcgacccgctgcaggagatcccggcgatcgccggcgccctgggc
gtgcaggcggtgcacatcaaccgcgactacgaacccgccgccgtggcgcgcgacgcccag
gtgcgcggcgcgctggcgcacgcgggcatcgcgctgcacagccacaaggaccaggtgatc
ttcgagaccgacgagatcctgacgatggccggctcgcccttcagcgtcttcacgccctac
aagaacgcctggctgaagaagctcgacggctactacctgcgcgcctacccggtgcagcgc
cacatcggcgcgctggcgccggtgccggcggcgctggaccgcggcgtgccgacgctcaac
gacctcgatttcctgccgaccgacatggccgcccggctgcatccgggcgcctcgggcggc
gcgacgctgctgctcgacttcctggagcgcatcgaccgctatgccgacacgcgcgacttc
ccggcgatcaaggggccgagctacctgagcgtgcacctgcgtttcggcaccgtctcgatc
cgccagctggcgcggctggcacacgagcgcatggtgggcggctcgcgtggcgccgaggtc
tggctgtcggagctgatctggcgcgacttctatcaccagatcctgcaccaccacccgcgc
gtggtgacgcactgctacaagcccgaatacgaagcgctgcgctgggaacacggcaagcac
gccgagcagctgttcgccgcctggtgcgagggccgcaccggctatccgatcatcgacgcg
gcgatgctgcagctcaaccggaccggctacatgcacaaccgcctgcgcatggtggtggcg
agcttcctgaccaaggatctgggcatcgactggcgccgcggtgaagcgtatttcgcgctg
cagctcaacgactacgacctcgccgccaacaacggcggctggcagtgggcggcatcgacc
ggctgcgacgcgcagccgtatttccgcatcttcaacccgatcagccagagcctgcgcttc
gacgccgaggggcgtttcatccgccgctacctgccgcagctcgccgacctcagccgcgcg
gcgatccacgcgccgtggcaggccaagccgctcgaactgcaggcggcgggcgtcaagctc
ggccgcgactacccgatgccggtggtcgaacacgccgaggcgcgcgagctgacgctggcg
cgcttcgcagcggtcaagggggcggcggctcgatga
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