KEGG   Latimeria chalumnae (coelacanth): 102363313Help
Entry
102363313         CDS       T02913                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102363313 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcm03400]
    102363313 (LIG4)
Enzymes [BR:lcm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102363313 (LIG4)
DNA repair and recombination proteins [BR:lcm03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102363313 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT_2 BRCT RNA_ligase LIG3_BRCT mRNA_cap_enzyme Globin SSPI
Motif
Other DBs
NCBI-GeneID: 102363313
NCBI-ProteinID: XP_005997060
Ensembl: ENSLACG00000003282
UniProt: H3A217
LinkDB All DBs
Position
Un
AA seq 911 aa AA seqDB search
MSAEASTDSLPKKTVASQVPFADLCSTLEKIQKSKLRQDKTKYFGDFLDSWRKFHNALHK
NDLGTTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIDVLGLPKEGKDALKLLNYRTP
TSTQNEAGDFAVIAYFVLKQRCPNQGILTIQQVNCLLDSIANNNAVKGKDLMKKSLQQLI
TQSSALEQKWLIRMILKDMKLGISQQTIFHLFHPDAAELHNVTTDLDKVCRQLHDPSVSL
SDVSIMMFSAFKPMLAAIANIKQIEKQMNNQSFYIQMKLDGERMQLHKDGDVYKYFSRNG
FDYTQQFGAAPLDGSLTPFIHNVFKDTVQNCILDGEMMAYNPNTQTFMQKGSKFDIKRMV
EDSELQTCYCVFDVLMVNDQKLAQETLRRRHEILQTVFTPTQGRIHIVQKIEARTKKEVV
DALNDAIDNREEGIMVKDPMSVYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGL
RSGMMSHFLCAIAETPPSGKKPSVFHSFCRIGSGYTMEELYNLGLKLAKYWKPYSKKNPP
PTLLCGTEKPEFYLEPSNSVIVQVKAAEIVTSDMYKTGCTLRFPRIEKIREDKDWYECMT
LNDLDQLRDKASGKLASKHVDVDDVEPGKKRKIMPKVKKVIGIMEQFKAQDLSNVSKVSN
IFEDVEFCVINGNNEHSKTELEKGIAECGGLVVQNPGPETYCAIAGTENVRVKNITSSNK
HDVVKVEWLLDCLKKREFVPWQPCHMIHMSPSTEQHFACEYDRYGDSFYADTAEHQLKEV
FLRISKTKLKVRLDTIAELEQRYSWDESPLRMFREYVVYVDLYYIISDTAAKIQGTGLDI
RVLELRFHGAKVVTQLDECVSHVIVSDDHSRVSELKALRRTFKKKFKIVSDLWVIDSVKT
GCVQDENTYLI
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atgtctgcagaagcttctacagattctttgcctaagaagactgtggcatcccaagtccct
tttgctgatctttgctcaacattagaaaaaatacagaaaagcaaattgcggcaagacaag
accaaatattttggagattttctggattcctggcgaaaatttcacaatgcacttcataaa
aatgatcttggaactacagattccttttacccagcaatgcgacttattcttcctcagttg
gaaagggaaagaatggcttatggaataaaggaaactatgcttgccaagttgtatattgat
gttctgggtttgcccaaagaaggaaaagatgcactgaaacttctcaactacagaacacct
accagcactcaaaatgaggctggagactttgctgttattgcttattttgttctgaaacag
agatgtccaaaccaaggaatcttaacgatacagcaagtaaactgtcttttagactccatt
gctaataataatgctgtgaaaggaaaagatctcatgaaaaagagtctacaacagcttatc
actcagagctcggctctggaacaaaagtggctaatccgcatgattctcaaggacatgaaa
cttggaataagtcaacaaaccatatttcacctattccatcctgatgcagcagagttgcat
aatgtgacaacagacttagataaggtctgtagacagcttcatgatccttctgtgtccctt
agtgatgtctccataatgatgttttcagcctttaagccaatgcttgccgctatagcgaat
attaaacagattgaaaaacaaatgaacaatcagagcttctacatacaaatgaaacttgat
ggtgaacgaatgcagctgcacaaagatggggatgtgtataagtatttttcccgtaatgga
tttgattacactcagcagtttggtgctgccccactagatgggagtttaactccattcata
cacaatgtatttaaggatactgtacaaaactgtattcttgatggtgaaatgatggcctat
aatcctaacacgcaaacttttatgcaaaagggaagtaagtttgacatcaagcggatggtt
gaagattcagagttgcaaacatgctattgtgtttttgatgtgttgatggttaatgaccaa
aaattagcccaggagaccttaagaaggagacatgagattctccagactgtctttacacca
acacaagggagaatacacatagtacaaaaaatagaagctagaactaagaaggaagttgtt
gatgctttgaatgatgcaatagacaacagggaggaaggaattatggttaaagaccctatg
tctgtttacaagccagataagcgaggagagggatggttaaaaatcaaaccagaatatgtg
gatggcttgatggatgaactggatattttgattgttggaggatactggggaaaaggttta
cgtagtggcatgatgtcccatttcttatgtgctattgcagaaactcctccctctggcaag
aaaccatcagtgttccattccttctgtcgtataggttctggctacaccatggaggaactg
tataatcttggcttaaaactggctaagtactggaaaccctattcgaaaaaaaatccaccg
ccaacgcttttgtgtgggactgaaaaacctgagttttacctagagccatctaattctgtc
attgttcaggttaaggcagctgaaattgtcaccagtgatatgtataaaactgggtgcact
ttgcgatttcccagaattgaaaaaataagggaagacaaagactggtacgagtgcatgaca
ttaaatgacttggatcaacttcgagacaaagcatcagggaagttagcctccaagcatgta
gatgtggatgatgtcgaaccaggaaagaaacggaaaatcatgccaaaagttaagaaagtg
attggaattatggaacagtttaaggcccaagatctttcaaatgtaagcaaggtttctaat
atatttgaagatgttgaattttgtgttatcaatggaaataatgagcactctaaaacagag
ctagaaaagggaatagctgaatgtggtgggctcgtggtgcagaatcctgggcctgagact
tactgtgctattgcgggaacagaaaacgttagagtcaaaaacattacctcctcaaacaaa
catgatgttgtgaaagttgaatggcttttggattgcctgaagaagagagagtttgtgcct
tggcaaccctgccacatgattcacatgtctccatctacagagcaacactttgcttgtgaa
tacgaccgctatggtgatagtttctatgctgacacagctgagcaccaactaaaagaagtg
ttcctgagaataagtaagaccaaattaaaagtgcgtttggacacgattgctgagttagaa
cagcgctactcttgggatgaatctccattaagaatgttcagggagtatgtcgtatatgtt
gacttatattacattattagtgacacggctgcaaaaatccaaggcacaggattagacata
agggtcttggagctacggtttcatggagcaaaagtggtaacacagttggatgaatgtgta
tcacatgttatagtcagtgatgatcattcacgtgtttcggagctaaaggccctccgaaga
acatttaaaaagaagtttaagatagtatcagatttatgggtgattgattcagtaaagaca
gggtgtgtacaggatgaaaatacatatctgatttag

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