Larimichthys crocea (large yellow croaker): 104920669
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Entry
104920669 CDS
T04659
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03030
DNA replication
lco03410
Base excision repair
lco03420
Nucleotide excision repair
lco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104920669 (rfc5)
03410 Base excision repair
104920669 (rfc5)
03420 Nucleotide excision repair
104920669 (rfc5)
03430 Mismatch repair
104920669 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lco03032
]
104920669 (rfc5)
03036 Chromosome and associated proteins [BR:
lco03036
]
104920669 (rfc5)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104920669 (rfc5)
DNA replication proteins [BR:
lco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104920669 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
104920669 (rfc5)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
104920669 (rfc5)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104920669 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
104920669 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_11
AAA_22
AAA_24
RuvB_N
AAA_16
AAA_assoc_2
DEAD
AAA_14
ResIII
DUF815
DNA_pol3_delta
PhoH
AAA_7
AAA_5
AAA_19
TIP49
AAA_30
ATPase_2
AAA_2
AAA_25
Mg_chelatase
Thioredoxin_6
T2SSE
Glyco_hydro_57
bpMoxR
Motif
Other DBs
NCBI-GeneID:
104920669
NCBI-ProteinID:
XP_019127557
LinkDB
All DBs
Position
III:complement(33102894..33107077)
Genome browser
AA seq
332 aa
AA seq
DB search
MATNKAQSRNLPWVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGKTST
ILACARQLYKDREFNSMVLELNASDDRGIDVVRGPVLSFASTRTIFKKGFKLVILDEADA
MTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHV
IQEESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIAN
ILDWSLNKDFNTAYKQILQLKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADIE
HRLASGTDEKIQLSSMVAAFQAVRDLVVSEAS
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaataaagcacagagcaggaatctgccgtgggttgaaaagtacagaccacag
aaactcgacgatctgatctcacacaaagatatcctgagcaccatccagaagtttatcagt
gaggacaagctcccccatctcttgttctacggcccccctggaacaggcaaaacctccacc
atcctcgcctgtgccaggcagctgtacaaggacagagagttcaactccatggtgttggag
ctaaacgcatcagatgacagaggtattgatgttgtacgaggtcctgttctgagttttgcc
agcaccaggaccatcttcaagaagggcttcaagttggtgatactggacgaggccgatgcc
atgacccaggatgcccagaatgcattgcggcgagtgattgagaagtttacagaaaacact
cgattctgtctgatctgcaactatctgtccaagatcatccccgccctgcagtctcgttgc
accagatttcgtttcggcccgctgtccccggaccagatgatcccacggctggagcacgta
atacaggaggagagcattgacataactccagatgggatgaaagccattgtgaccttatca
tcaggtgatatgagaagatcacttaacatactgcagagcaccagtatggcgtacgggaag
gtcacagaggacactgtgtacacctgcacaggtcaccccctccgctccgatatagccaac
atcctcgactggtccctcaacaaagacttcaacacagcatacaagcaaatccttcagctc
aagactttgaaaggtttggccctgcatgatatcctcactgaggttcatctgctcatacac
agagtggactttcctccgtctattcgtatgggtctgctcatcaagttggctgacatcgaa
caccggctcgcctcaggaaccgatgagaagatccagctgagctccatggttgcagctttc
caggcagtgagagaccttgtggtcagcgaggcctcgtag
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