Larimichthys crocea (large yellow croaker): 104926275
Help
Entry
104926275 CDS
T04659
Symbol
itgb5
Name
(RefSeq) integrin beta-5
KO
K06588
integrin beta 5
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04145
Phagosome
lco04148
Efferocytosis
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04810
Regulation of actin cytoskeleton
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104926275 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
104926275 (itgb5)
04148 Efferocytosis
104926275 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
104926275 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104926275 (itgb5)
04810 Regulation of actin cytoskeleton
104926275 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104926275 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104926275 (itgb5)
Membrane trafficking [BR:
lco04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
104926275 (itgb5)
Cell adhesion molecules [BR:
lco04515
]
Integrins
Integrin beta subunits
104926275 (itgb5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
PSI_integrin
Integrin_b_cyt
I-EGF_1
EGF_2
Motif
Other DBs
NCBI-GeneID:
104926275
NCBI-ProteinID:
XP_027146777
LinkDB
All DBs
Position
XVIII:complement(12769638..12820444)
Genome browser
AA seq
805 aa
AA seq
DB search
MWSPRTGTWMWRAALCCMLLETCLHSARGLNMCMSGSATSCEECLLIHPSCAWCAQEEFG
RGRSLTSRCDFSQNLQKRGCESRFIEFPTSSISILRNRPLSSKGSGSTQYDVVQIMPQKI
SLSLRPGDQTWFGLQVRQVEDYPVDLYYLMDLSLSMKDDLHTIRNLGTKLAEEMGKLTSN
FRLGFGTFVDKNMSPFSYTAPKYQENPCNGYKLFPNCVPTFGFRHILSLTDKVDRFNEEV
QKQMVSRNRDAPEGGFDAILQAAVCKEEIGWRKEAYHLLVFATDDVPHLALDGRLGGLVQ
PHDGRCHLNDKNEYSASTKMDYPSLALLGEKLAENNIFLIFAVTKRLYVIYKNFTALIPG
TTVEILDQDSKNVIQLIITAYNNIRSKVELSVWDHPEDISLSFTATCQDGRPLPGLRKCA
DLMIGDTVSFNVSVEARGCPPRGADHSFTIKPVGFKDRLEVVVDYQCDCGCSRTAQTNSS
ICSSIGTYNCGTCHCEPGYLGARCECQEGEASSMYLSACREAEGKQICSGRGECSCNQCL
CYESEFGKIYGSFCECDDFSCARHKGILCSGHGECHCGECKCHAGYIGDNCNCSMETSSC
ISGDGRMCHGRGNCVCGRCQCTEPGAFGDTCEKCPTCPDACGTKRECIECRLFNSGRLAD
NQTCQRLCKDEIITVETLKTDDPGAVLCLYKTDNDCVMKFTYSEHASGTSILTALKEPEC
GGGTDALTVLLAVVGSILLVGVVLLAVWKLVITVHDRREFARFQSARSRARYEMASNPLY
KQPVSTHFVETDFNMYGKSYNGGVH
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcccgaggacggggacgtggatgtggcgagcggctctgtgctgcatgctcctg
gaaacatgtctgcacagtgccagaggtctcaacatgtgtatgagcggcagcgctacgtcc
tgtgaagaatgcctcctgattcaccccagttgcgcctggtgcgcacaagaggagtttggg
agggggcggtctctgacgtcgcgctgcgattttagtcaaaacctgcagaagaggggctgt
gagtcacggttcatcgagttccccaccagcagcatttctatcctgcgtaacaggcccctg
agttctaaagggtccgggtcgacccagtacgatgttgtccagatcatgcctcagaagatc
tctctcagcttgcggccaggagaccagacttggtttggactgcaggttcgtcaggttgag
gactaccctgtggatctctactacctgatggacctctctctttccatgaaagatgatctg
cacaccatccgtaacttgggcaccaagctggctgaggagatgggcaagctcaccagcaac
ttcaggctgggctttggtacctttgtggacaaaaacatgtctcctttctcttacacagca
cccaagtaccaggagaatccatgcaatggatacaaactgttccccaactgcgtccccacc
ttcggcttccgccacatcctctcactgacagataaagtggaccgattcaacgaggaggtg
cagaagcagatggtgtctcggaaccgggacgcaccggagggcgggttcgacgccatcctg
caggcagcggtttgtaaggaggagatcggttggaggaaggaggcataccacctgctggtg
ttcgccacggacgacgtacctcacctggctctggacggccggttgggcggccttgtccag
ccccacgatggacggtgtcacctgaatgacaagaatgagtacagcgcttccacgaagatg
gactatccgtctctggctcttctgggggagaaactggcagaaaataacatcttcctcatt
tttgcagtgacaaaacgtctctacgtgatttataagaatttcactgcgctcatacctgga
accacagtagaaatcctggaccaggactctaagaatgtcatccagctgatcatcacagct
tacaataacatccgttctaaagtggagctgtcggtgtgggatcacccagaggacatcagc
ctttcctttaccgctacctgccaggatggacggccgctgccgggcctcaggaaatgcgcc
gacttgatgataggagacactgtatcgttcaacgtgagtgtggaggcaaggggctgccct
ccccgcggcgctgaccacagcttcactatcaagccggtggggttcaaagaccgcctggag
gtggttgtcgactatcagtgtgactgcggctgcagtcggacggcacaaaccaacagcagc
atctgtagttctataggtacttataactgtgggacttgccactgcgagccaggatacctg
ggcgcccgctgcgagtgccaggagggcgaggccagcagcatgtacctgagcgcctgccgg
gaagccgagggcaagcagatctgcagcgggcgaggagagtgcagctgcaaccagtgcctg
tgctacgagtccgagttcggcaagatctacggcagcttctgcgagtgcgacgacttctcg
tgcgcccggcacaaaggcatcctctgctcaggtcatggagagtgtcactgtggggagtgt
aaatgccacgctggttacattggcgacaactgtaactgctccatggagacgtcgtcctgt
atttcgggtgacgggaggatgtgccacgggcgtggaaactgcgtgtgcggccgctgtcag
tgtactgagccaggggcatttggagacacgtgtgaaaaatgccccacctgccccgacgcc
tgtggcactaaaagagagtgcatcgagtgccggcttttcaactccggacggctcgcagac
aaccagacctgccagcgcctgtgcaaagatgaaatcatcactgtggagaccctcaaaaca
gacgaccccggcgctgtgctctgtctctacaagacagacaacgactgtgttatgaagttc
acgtattctgagcacgccagcggaacatccatcctcacagctctgaaagagccagagtgc
ggtggtgggacggatgctctcacggtgctgctcgccgtggtcggcagcatcctgctggtg
ggagtggtgctgctcgccgtctggaagttggtcatcaccgttcacgaccgccgagagttt
gcacgcttccagagcgcgcgctcgcgagcccgatacgagatggcctccaaccctctgtat
aagcagcccgtctctacacactttgtggaaacagatttcaacatgtatgggaagtcttac
aacggaggggtccactga
DBGET
integrated database retrieval system
