KEGG   Larimichthys crocea (large yellow croaker): 104926552Help
Entry
104926552         CDS       T04659                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03030  DNA replication
lco03410  Base excision repair
lco03420  Nucleotide excision repair
lco03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104926552 (lig1)
   03410 Base excision repair
    104926552 (lig1)
   03420 Nucleotide excision repair
    104926552 (lig1)
   03430 Mismatch repair
    104926552 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lco03032]
    104926552 (lig1)
   03400 DNA repair and recombination proteins [BR:lco03400]
    104926552 (lig1)
Enzymes [BR:lco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104926552 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     104926552 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     104926552 (lig1)
DNA replication proteins [BR:lco03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    104926552 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     104926552 (lig1)
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     104926552 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     104926552 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     104926552 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 104926552
NCBI-ProteinID: XP_019120449
LinkDB All DBs
Position
Un
AA seq 1020 aa AA seqDB search
MQRSIASFFQPKNKDNNIQKKSADAPVKKPAKSPLKVQNGVQEPDSPIKKVAKRSRQILD
SDDDEAPPAVKEQVATKGQGDKEAGGKAEKKDDVFKAVPTPLSPPPAPATPVTPATPATP
ASSASPGTPSTPNSISPSGIVKRKTARKTFPKRKLNESMSGSESQKDEAEAKEAQGQQKK
RPRVESGGSSPGNPGEPMEEGAKEEAVEKAVTEANGPDEEVESEKKEEGEKTRDDEEEEE
EEEEEQVERKGSDEKEKKSEGAMKKNEAKEKTDDEKGPAVAKEEVVEKDTREGEESPKSQ
TARKQKEAKEQKDKEPPKKAPISSFFAPRKAVVKTEKPEKSEGEKKTSAERKTSAEDSKD
TKGESGQTDYNPARPNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLF
RSVLLLSPDDLLCCVYLCLNQLGPAHLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEK
GDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIAGMSGNSAMNKKIDIIKGLFVACRF
SEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQEFPPAVIDAGKGMSTESRRAWI
EEKSLILKQTYCEMPNYDVLIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMK
RFDEAAFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTTKYPDIISRIPKVKKDSVVSC
VLDAEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLC
RRRALLKESFSEVEGEFVFARSIDSDNTETIAEFLEQSVRDSCEGLMVKTLEKDATYEIA
KRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKI
GTGFKDEDLEQHYKFLKEHILPKPRAYYRVEQSAEPDVWLDAVQVWEVKCADLSLSPIYK
AGMGMVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADLEDYY
NT seq 3063 nt NT seq  +upstreamnt  +downstreamnt
atgcagcggagcatcgcatccttctttcagcccaagaacaaggacaacaacatccagaag
aaaagtgcagatgcaccagtgaagaagcctgccaaaagccccctcaaggtgcagaacggc
gtccaggaacccgattcgcccatcaagaaggtcgcgaaacgcagccgtcagattctggac
agcgacgacgacgaggcgccgccggcagttaaagaacaagttgccaccaaggggcaggga
gacaaagaggctggcggcaaagcggagaagaaggacgatgtgtttaaggcagttcccacc
ccgctgtctcctcctccagccccggccacccctgtaacgcccgccactccggccaccccg
gcctcttcggcttcacctgggacccccagcaccccgaactccatctccccgtctgggatt
gttaaacgcaagaccgcgaggaagacgttcccgaagaggaagctcaacgagagcatgagc
ggcagcgagagtcagaaggatgaggccgaggccaaggaggcgcagggtcagcaaaagaaa
cgaccccgtgtggagagcggcggcagcagcccagggaaccccggtgaacccatggaggag
ggagcaaaggaagaagcagttgaaaaggctgtgaccgaggccaacggcccagatgaggag
gtggagagcgagaagaaagaggaaggcgagaagaccagggatgatgaggaggaggaggag
gaggaggaggaggagcaggtggagagaaagggctctgatgagaaagaaaagaaatctgag
ggggcgatgaagaagaatgaagcaaaggagaagacggatgatgagaaagggcctgctgtt
gccaaagaggaggtggttgaaaaggacacgcgcgaaggagaagagagcccaaaaagtcaa
acggcgagaaagcagaaagaagcaaaagagcagaaagataaggagccgcccaagaaagcg
cccatcagcagtttctttgctcccaggaaagctgtagtgaagacagagaaaccagagaaa
agtgaaggcgagaaaaagacgagtgcagagaggaaaacttcagcggaggacagcaaagac
accaaaggtgagtcaggacaaacagactacaatccagccaggcccaactaccatcctgtg
gaccatgcctgctggaagcagggccaaaaagtgccgtacttggctgtggctcgcaccttt
gagaagattgaagaggactctggcaggctgagaaacatcgagacgctgtcgaacctgttt
cgctccgtgctgctgctctctccagatgacctgctgtgctgtgtgtatctatgtttgaac
cagctgggtcctgcccacctggggatggagcttggcgttggcgagacggtgctgatgaaa
gctgttgctcaagcaactgggcgacaattggacaaaatcaaggcagaggcgcaggagaaa
ggcgatctgggcctcgtggcggagagttcccgtagcaaccagcgcatgatgttccaaccg
gccagtctgacagcagggggcgtgttcaggaaattgaaggaaattgccggcatgagtggg
aactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttt
tccgaggcccgctacatagtcaggtccctggctgggaagctgaggataggcctggctgag
cagagtgtcctatcagcactgagccaggctgtgtgtctgaccccccctggacaagagttc
cctccagctgtgatcgacgcggggaaagggatgagcacggagagcaggcgggcctggatt
gaagaaaagagtctcattctcaaacagacttactgcgagatgcccaattacgacgtcctc
atcccggttctgctgaaagagggcatagacgagctacccaatcactgcaagctcactcca
ggcgtgccgctgaggcccatgttggctcacccgaccaagggtgtcggcgaggtgatgaag
aggttcgatgaggcggcgttcacctgcgagtacaaatacgacggagagcgtgcacagatt
cacattctggagagcggcgaggttcgaatattcagccgcaaccaggaagacaacaccacc
aaatacccagatatcatctctcgcattcccaaggtgaagaaggactctgtggtgtcctgc
gtcctggacgcggaggccgtggcctgggatcgcgagaagaaacagatccagcccttccag
gtcctcaccactcgtaagagaaaggatgtggatgcctcggagatcaaagtccaagtgtgc
gtgtacgcctttgacctcctctatctcaacggcgagtccctggtgcgacagccgttgtgt
cggcgtcgggctctgctgaaagaaagcttctcagaggtggagggagagtttgtgttcgcc
cgatccatcgactccgacaacaccgagaccatcgccgagttcctggagcagtctgtccga
gactcctgcgagggcctaatggtgaagactctggagaaggacgccacctatgaaatcgcc
aagcgctctcataactggttgaagctgaagaaagactacctggagggcgtgggcgacacg
gtggacctgtgcgtgattggcgcctacctgggaaaaggcaagaggacgggcacctatgga
ggcttcctgctggcctgctacgacgaggacaacgaggagttccagtccgtctgcaagatc
gggacaggcttcaaggatgaagatctggagcagcattacaagttcttaaaggagcacatt
ctgccaaagccccgcgcctactaccgcgtggaacagtcggcggagcccgacgtgtggctg
gacgccgtgcaggtttgggaggtgaagtgcgccgacctctcgctgtcacccatctacaag
gccggcatgggaatggtggatccagaaaagggcatttctctgaggttcccccgcttcctt
cggatcagagacgacaagaagcccgaggacgccacgactggtgctcagatcgctgatttg
tacaagaagcagcagcagattcagaaccagggggagaaagccgacctagaggactactac
tga

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