Larimichthys crocea (large yellow croaker): 104929780
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Entry
104929780 CDS
T04659
Symbol
actn1
Name
(RefSeq) alpha-actinin-1 isoform X1
KO
K05699
actinin alpha 1/4
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04520
Adherens junction
lco04530
Tight junction
lco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104929780 (actn1)
04520 Adherens junction
104929780 (actn1)
04530 Tight junction
104929780 (actn1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
104929780 (actn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104929780 (actn1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lco04812
]
104929780 (actn1)
04147 Exosome [BR:
lco04147
]
104929780 (actn1)
Membrane trafficking [BR:
lco04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
104929780 (actn1)
Cytoskeleton proteins [BR:
lco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
104929780 (actn1)
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104929780 (actn1)
Exosomal proteins of colorectal cancer cells
104929780 (actn1)
Exosomal proteins of bladder cancer cells
104929780 (actn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_8
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_5
XisI
Motif
Other DBs
NCBI-GeneID:
104929780
NCBI-ProteinID:
XP_027130801
LinkDB
All DBs
Position
XXIV:2786788..2849150
Genome browser
AA seq
890 aa
AA seq
DB search
MDQYDGDEDYMPQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDG
LKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNAKM
TLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCAL
IHRHRPELIDYGKLRKDDPMTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYV
SSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRLP
ENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVS
DINNAWGNLEGAEKGYEEWLLNEIRRLERLDHLAEKFRQKAAIHEAWTEGKEDMLQKRDY
ETASLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQRICDQ
WDALGALTQKRSEALQRTEKLLETIDQLYLEFAKRAAPFNNWMEGAMEDLQDTFIVHTIE
EIQGLSTAHEQFKATLPEADKERQAILGIHNEIAKIVQTYHVNMAGTNPYTTINPQEINA
KWEKVRQLVPQRDQALIEEHARQQNNERLRRQFANQANVIGPWIQTKMEEIGRISIEMHG
TLEDQLTHLRQYEKSIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTMEHIRVGWEQLLT
TIARTINEIENQILTRDAKGISQEQLNEFRASFNHFDRDHSGALGAEEFKACLISLGFDI
ANDAQGENEFSRIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKVLAGDKNY
ILADELRRELPPDQAEYCIARMAPYTGPDGVPGALDYMSFSTALYGESDL
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggatcagtatgacggagacgaagattacatgccccaagaagatgactgggatcgggat
ctgctcctggatccggcatgggagaagcagcagagaaagacatttacagcttggtgtaac
tctcacctgaggaaagcaggcacgcagatcgagaacatcgaggaggacttccgggacgga
ctgaagctcatgctgctgctggaggtcatctcaggcgaacgcttggccaaaccagagaga
ggcaagatgagagtccacaagatctccaacgttaacaaagcgctcgacttcatcgccagc
aaaggagtcaaactggtgtctatcggagccgaggagatcgttgatggcaacgctaagatg
accctgggaatgatctggaccataatcctccgcttcgccatccaagacatttctgtggaa
gagacatctgccaaagaaggcctcctgttgtggtgccagaggaagactgcaccctacaag
aatgtcaacatccaaaactttcacatcagctggaaagatggtttgggtttctgtgcgctc
attcatcgacaccgtccagagctcattgactacggaaaactgcgcaaggacgaccccatg
accaacctgaacacagccttcgacgtggcagagaagtacctggacatccccaagatgttg
gacgcagaagacattgtgggcactgcccgtccggacgagaaggcgatcatgacctacgtc
tctagcttctaccacgccttctcaggcgcccagaaggcggagacggcggccaacaggatc
tgcaaggtgctggctgtcaaccaagagaatgagcagctgatggaggactatgagaagctg
gccagtgatctgttggagtggatccgtcgcaccatcccctggctcgagaaccgcttgccc
gagaacaccatgcaggccatgcagcagaagctggaggacttcagagattaccgccgcctc
cacaagccgcccaaagtgcaggagaagtgccagctggagatcaacttcaacaccctgcag
accaagctgaggctcagcaacaggcccgccttcatgccctcggaggggaagatggtctcg
gacatcaacaacgcgtggggaaatctagagggagcggagaaaggttacgaagagtggctc
ctcaatgagattcgcaggctggaaagactcgatcacctggcggagaagtttcgccagaaa
gcagccatccatgaagcctggactgaaggtaaggaggacatgctgcagaagcgtgactac
gagacggcctctctgtcagagatcaaggccctgctgaagaaacacgaggccttcgagagc
gacctggctgcacatcaggaccgcgtggagcagatcgcagccatcgcacaggagttaaat
gagctggactactacgactcccccagtgtaaacgctcgctgccagaggatttgtgaccaa
tgggacgccctgggagctctgacccagaaacgcagcgaggctttgcagagaaccgagaag
ctgcttgaaaccatcgaccaactgtaccttgagtttgccaaaagagcggctccattcaac
aactggatggagggcgccatggaggacctgcaggatacctttatcgtccacaccatcgaa
gaaatccagggattaagcacggcccacgagcagttcaaagccacgctgccggaggccgac
aaggagcgccaggccatcctgggcatccacaacgagattgccaagattgtgcagacctat
cacgtgaatatggctggcaccaacccgtacaccaccatcaacccacaggagatcaatgcc
aaatgggagaaggtcaggcagctggtgcctcagcgcgaccaggctctgatcgaggaacac
gcccggcagcagaacaacgagcgactgcgccgacagttcgccaaccaggccaatgtcatc
gggccctggatccagaccaagatggaggaaatcggccgcatctcgatcgagatgcacggc
accctggaggaccagctgacacacctacgccagtacgagaagagcatcgtcaactacaag
ccaaagatcgaccagctggagggagaccaccagctcattcaggaagccctcatcttcgac
aacaaacacaccaactacaccatggagcacatccgtgtgggctgggagcagctactcacc
accatcgcccgcaccatcaatgaaatcgagaaccagatcttgacgcgagacgccaagggc
atcagccaggagcagctgaacgagttccgggcctctttcaaccacttcgacagggaccac
tcgggcgctctgggcgcggaggagttcaaggcctgcctgatcagcctgggcttcgatatc
gccaacgatgcacagggtgaaaacgagttctcccgcatcatgagcatagtggatcccaac
cggatgggcgtcgtcaccttccaggccttcatcgacttcatgtcccgcgagacggccgat
acagacactgccgaccaagtcatggcctccttcaaagtcctggcgggggataagaactac
attttagccgacgagctgcgccgggagcttcctccagaccaggcggagtactgcatcgcc
cgcatggcgccctacaccgggcccgacggcgtgcccggagccctcgactacatgtccttc
tctaccgctctgtacggagagagcgacctctga
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