Larimichthys crocea (large yellow croaker): 104939165
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Entry
104939165 CDS
T04659
Name
(RefSeq) LOW QUALITY PROTEIN: interferon regulatory factor 9
KO
K04693
interferon regulatory factor 9
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04217
Necroptosis
lco04620
Toll-like receptor signaling pathway
lco04621
NOD-like receptor signaling pathway
lco04625
C-type lectin receptor signaling pathway
lco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
104939165
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
104939165
04621 NOD-like receptor signaling pathway
104939165
04625 C-type lectin receptor signaling pathway
104939165
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
104939165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104939165
Transcription factors [BR:
lco03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
104939165
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IRF
IRF-3
DTHCT
Pap_E4
Motif
Other DBs
NCBI-GeneID:
104939165
NCBI-ProteinID:
XP_027130007
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All DBs
Position
XXIII:2390925..2398324
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AA seq
442 aa
AA seq
DB search
MAAGRTRSTRRXRSWIVEQVSSGKYPGLVWDDDAKTMFRIPWKHAGKQDFRKDEDAAIFK
AWAEFKGKLTDGDQDNPASWKTRLRCALNKSPEFDEVMDRAQLDISEPYKVYRLVPISEQ
GVVVPEKKFNKIKAPKRSKRRRRSSSSSESDSDDGSKVKQIKTEAATSQLFVEEALQRIE
NPVLTEELTQHISSMQTEVVDEITLDVRIEESVPAQTGVQDSFCVVVHYLGQEVLRREIQ
GTDVRITYLPSSPAPPTPAILKNRFPRIPLPEPPSTLQTGGELQALFTLLPFMDKGVVLT
STPQGVYGKRFCQGRVFWTGPHTTEPGLHKMERNTAPVLLFSKDAFKQQLDHFRSNGGEP
PQCGITLCFGEELSNSEDPSRKLIIVQITLPWAEQQVQNTQSIFDSIHILQSLASQSPLG
EITLNLVTVPSPTSETITCGST
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaggcagaacgcgctccacacgcagancgcgctcctggatcgtcgaacaggtc
agcagtgggaaatatccgggcctggtgtgggacgacgacgccaagaccatgttccgcatc
ccgtggaaacacgccggcaaacaggacttccggaaagacgaggacgccgccatcttcaag
gcgtgggccgagttcaaagggaagctgacggacggggatcaggacaacccggcgtcctgg
aagacccgtctgcgctgcgccctcaacaagagtccggagtttgacgaggtgatggatcga
gcccagctggacatctcggagccgtacaaggtctaccgcctggtgcccatcagcgagcag
ggcgtggtagtccctgagaagaagttcaacaaaataaaagcccccaagaggtcgaaaagg
aggaggaggagcagcagcagcagcgaatcggacagcgacgacggcagtaaggtgaagcag
ataaagacggaggcggccacgtcgcagctgtttgtcgaagaggctctgcagcggatcgaa
aaccccgtcctgactgaagagctgactcaacacatctcctccatgcagacagaagtggtc
gatgagatcacgttggacgtgcggatcgaggagagcgtccccgctcagacaggagtccag
gactccttctgcgtggtggttcattatttaggtcaggaggtcctcagacgtgaaatccaa
ggcaccgacgtccggataacgtacctgccttcctctcccgccccgccgactccggccatc
ctgaagaacaggtttccacgcatcccgctgcccgagccgccctccacgctgcagaccggc
ggcgagctgcaggccctgttcaccctgctgcccttcatggataaaggggtggtgctgacc
tccacgccgcagggggtctacggcaaacggttctgccaagggcgggtgttctggacgggc
ccgcacacgaccgaaccggggctgcacaagatggagaggaacacggccccggtgctgctc
ttcagtaaagacgccttcaaacaacagctggaccacttccgttcaaacggcggcgagcct
cctcagtgcggcatcacgctgtgcttcggagaggagctgagcaactccgaggacccgtcc
agaaaactcatcatcgttcagatcactttaccgtgggcggagcagcaggtccagaacact
cagtccatcttcgactccatccacatcctccagtctctggccagtcagtctccgctcggg
gaaataactctaaacctggtcaccgtgccctcgccgacgtccgagacgatcacctgcggg
tccacctga
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