KEGG   Larimichthys crocea (large yellow croaker): 104939299Help
Entry
104939299         CDS       T04659                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:lco00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lco01009]
    104939299 (hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lco03019]
    104939299 (hdac6)
   04131 Membrane trafficking [BR:lco04131]
    104939299 (hdac6)
   03036 Chromosome and associated proteins [BR:lco03036]
    104939299 (hdac6)
Enzymes [BR:lco01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     104939299 (hdac6)
Protein phosphatases and associated proteins [BR:lco01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     104939299 (hdac6)
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     104939299 (hdac6)
Membrane trafficking [BR:lco04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    104939299 (hdac6)
Chromosome and associated proteins [BR:lco03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     104939299 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl
Motif
Other DBs
NCBI-GeneID: 104939299
NCBI-ProteinID: XP_027131423
LinkDB All DBs
Position
Unknown
AA seq 1076 aa AA seqDB search
MSSGSEPPESGLKSVRRSPRLSPQSSGVEGKKEEKKGGSSLQEVKRRGKMERSREEEEEM
NDRLKKLDLSSRSAATGTGLVYSKVFTHHKNLWDPSHPECPDRVTSIMEELDRQELLSHC
ITVEPREASEEELLLGHMKHVDLMKSTQTMTQSELQTLSEKYDSVYIHPESFQVSVLAVG
SVLQLVDRVVTSELRNGFAIIRPPGHHAQCNEANGFSIFNNVAIAARYARTRHSVSRVLI
VDWDVHHGQGVQYLFQEDPSVLYFSVHRYEGGSFWPHLPESDSQFVGSGRAEGRNINLPW
NKTGMTDADYITAFQQLLLPVAHEFQPQLVLVCAGFDAAVGDPKGDMRVSPQCFHVLTHM
LMSLAEGRLVLALEGGYDLQSTAEGAAACVRALLGGACPPLTPPTAPSDSALQSVSQTIS
ALYPHWACLQILEGVSLAKGSVIRETNKQSAKQSSPARYVATTTGLVYDERMMEHMNMWD
RHHPEQPQRIFKIFSKHQQLGLVDRCQRIPARLATEEELSRCHSVQHIEQMKSTAVMKPR
DLHKLGVEFNSIYINNQSYRSALLAAGGCFNAVESILTGQVSNGVAIVRPPGHHAERDSP
CGFCFFNTAALAARHAQNISHDAPLRVLILDWDVHHGNGTQHMFEDDDSVLYVSLHRYDN
GMFFPSSEDAAPDRVGVSKGAGFNVNVAWNGGRMGDSDYLAAFHHVVMPIATEFDPGLVL
VSAGFDAARGDPLGGYHVTPEGYAHLTHQLMSLAGGRVLLILEGGYNLTSISDSMAMCTS
VLQGDPPPSLVTPLPPPHHSAVATINEVIRHHAPYWRSLRIHIPECVRASLPALKHRGKR
SSKGKGRKSDKPPLPPTGQEAHSLEQLTQGLASLDISQISASHTPATSTAVGGARPKVRL
SPEKVTCGGEVTLGQSQSAESMELQTQTVVVAASESVAAGEKCTSEGGAEPETEGACGWS
KRQTSLELMCGGQTAPLYVVDPLSWCPHLDSVKSPPPSGIDVSLLCQDCGSDAENWTCLT
CYQVFCGRYVNEHMVTHGVMSEHPMVLSFSDLSVWCYLCEAYVHHQVTDTVQTTNR
NT seq 3231 nt NT seq  +upstreamnt  +downstreamnt
atgtcgtctggatcagaacctccagaatctggactaaagtcggtcagaagatctccacgt
ctgtctcctcagagcagtggagttgaaggaaagaaggaggagaagaaaggagggagcagt
ctgcaggaggtgaagaggagaggaaagatggagaggagcagagaagaagaggaggagatg
aacgacagactgaagaagctggatctgtccagtcgatcagcagctactggaactggtctg
gtttactccaaggtcttcacccaccacaagaacctgtgggaccccagtcacccagagtgt
ccggaccgagtgacgtccatcatggaggagttggacagacaggagctgctgtctcactgc
atcacagtggagcccagagaagcttcagaagaagagctgctgctcggtcacatgaaacat
gtggatttgatgaagtcgactcagacgatgacgcagagtgaactccaaactctgtctgag
aaatacgactcagtttacattcatcctgagtctttccaggtgagtgtgttggcggtgggt
tcagttctccagctggttgatcgggttgtgacctctgaactcaggaacggatttgccatc
atcagacctccaggtcatcacgctcagtgtaacgaggcgaatggtttcagcatcttcaac
aacgtggcaatcgcagctcgatacgctcggaccagacactcagtcagcagggtgctgatt
gtggactgggacgttcatcatggtcagggtgtccagtatctgttccaggaagaccccagc
gtcctgtacttcagtgtccacaggtatgagggcgggtctttctggccccacctcccagag
tcggacagccagtttgtcggcagtggacgagctgaaggcagaaacatcaacctgccctgg
aacaagaccggaatgacagacgctgattacatcacagcttttcaacaactgctgcttcct
gtagctcatgagtttcagcctcagctggttctggtctgtgctggatttgatgctgcagtc
ggagatccaaagggggacatgcgtgtcagtcctcagtgtttccatgttctcactcacatg
ttgatgagtttggctgaaggtcgacttgttctcgccctcgagggaggttatgacctgcag
tcgacagcagagggcgctgctgcctgtgtcagagctctgctgggaggagcctgtcctcct
ctgactccgcccaccgccccatctgacagtgctttgcagtctgtctctcagaccatctca
gctttgtatccacactgggcgtgtctacagattctggaaggtgtctcattggccaagggg
agtgtcatcagagaaaccaataagcagagtgctaagcaatctagccccgcccgttatgtt
gctacgacaacaggtctggtttatgatgagcggatgatggagcacatgaacatgtgggac
agacatcatcctgagcagcctcagaggatctttaaaatcttctccaaacatcaacagctg
ggattggtcgatcgttgccagcggataccagctcgcttagcaacagaggaggagctgtcc
aggtgtcacagtgtgcagcacatcgagcagatgaagagcacggcggtgatgaagcccaga
gatttacacaaacttggagtcgagttcaactcgatctacatcaacaaccagagctacagg
agcgctctgctcgctgctggaggctgcttcaacgccgtggagagcatcctcacaggacag
gtgagtaacggcgtggcgatcgtccgtcctcctggtcatcacgcagagagagattctccg
tgcggtttctgcttcttcaacacggcagcgctcgccgctcgccacgcccaaaacatctcc
catgatgcaccgctgcgcgttctcatcctggactgggatgttcaccatggcaacgggacg
cagcacatgtttgaggatgacgacagcgtcctgtatgtctccctccatcgctatgacaac
gggatgttcttcccgtcctcagaggacgccgcccccgacagggtgggcgtgtccaagggg
gcggggtttaacgtcaatgtagcgtggaatggagggcggatgggcgactctgactacctc
gccgcctttcaccacgtggtcatgccgatcgccaccgagtttgaccctggtctggtgctg
gtgtcagccgggttcgatgcggctcggggggatccgctgggcggatatcatgtgaccccg
gagggatacgcccacctcacacaccagctgatgtcactagcaggggggcgtgtcctactc
atactggagggaggttataacttaacatccatctctgactccatggcgatgtgcaccagc
gtgttgcaaggagacccccctccctccttagtgacacccctcccccctcctcatcacagc
gccgtagcaacaatcaacgaggtcatcagacaccacgccccctactggaggtcactgagg
atccacatcccagagtgtgtgcgggcgtccctgcccgccctgaagcatcgtgggaaacgt
agttctaaaggaaaaggcaggaagtcggacaaaccaccgctgcctcctacaggacaggag
gcgcacagcctggagcagctcacgcagggattggccagtttggacatcagtcaaatctca
gccagtcacacgcctgccacgtccacagcagtgggtggggccaggccgaaggtccgcctc
agcccggagaaggtcacctgtggaggtgaagtgacacttgggcagagccaatcagcagag
agcatggagctgcagacccagacggttgtcgtggcagcgtcagagtcggttgccgctgga
gagaaatgtacaagtgaagggggggcggagccagagacagagggagcgtgtggttggtca
aagcgtcagacgtctctggagctgatgtgtggaggacagacggcccctctgtacgtagtg
gaccctctgtcttggtgtcctcacctggactccgttaagtcccccccaccctcaggtata
gatgtctccctgttgtgtcaggactgtgggtctgatgctgagaactggacctgtctcacc
tgctaccaggtgttctgtggtcgttatgttaatgagcatatggtgactcacggcgtgatg
tcagaacatcccatggtgcttagcttctctgacctctccgtgtggtgttacctgtgtgag
gcctacgtccaccaccaggtaacagacacagtacagaccacaaacagataa

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