Lysobacter capsici: LC55x_5231
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Entry
LC55x_5231 CDS
T04162
Name
(GenBank) eukaryotic DNA topoisomerase I, catalytic core family protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lcp
Lysobacter capsici
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcp03032
]
LC55x_5231
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_5231
Enzymes [BR:
lcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LC55x_5231
DNA replication proteins [BR:
lcp03032
]
Prokaryotic type
DNA Topoisomerases
LC55x_5231
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LC55x_5231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF4124
Motif
Other DBs
NCBI-ProteinID:
ALN88478
UniProt:
A0A0S2FXU6
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All DBs
Position
complement(5817040..5818122)
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AA seq
360 aa
AA seq
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MSQSKSSAALPAVANRRAARAAGLRYVNDGEPGIARRRAGRGFAYRDPRGRAVSAAKTLE
RIRALAIPPAYTQVWICTDARGHLQATGRDARGRKQYRYHPQWRQTRDEGKFERVIAFGR
ALPALRRKVRRDLKLPGFPRDKVLAIVVAVMAETLLRVGNHEYARSNRSFGLTTLRNRHV
DFLRGGRARFRFRGKGGLALEVELDNAKLVAQVRRCQQLPGQALFQYRDDDGRLQPVDSG
AVNAYLHEAMGADFTAKDFRTWGGTLAAFRRLAELPLPEPSRSGKPSERALLLAQNAVIG
EVAQALRNTPSVCRKAYIDPAVFSGWREGRLSRYADGARSELQWESAALRFLKQARKHAG
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtccaaatcctccgcagccttgcccgcggtcgccaaccgccgcgccgcgcgc
gcggccggcctgcgttacgtcaacgacggcgagccgggcatcgcgcgccgccgcgccggc
cgcggcttcgcctatcgcgatccgcgcgggcgggcggtgagcgcggcgaaaaccctcgaa
cgcatccgcgcgctggcgatcccgccggcctatacgcaggtgtggatctgcaccgacgcg
cgcggccatctgcaggccaccggtcgcgatgcgcgcggacgcaagcaataccgttatcac
ccgcaatggcggcagacccgcgacgaaggcaagttcgaacgcgtgatcgccttcggccgc
gccttgccggcgctgcggcgcaaagtgcggcgcgatctcaagctgccgggcttcccgcgc
gacaaagtgctggcgatcgtggtcgcggtgatggccgaaaccttgttgcgcgtgggcaat
cacgaatacgcgcgcagcaaccgctcgttcggcctgaccaccttgcgcaatcgtcatgtc
gatttcctgcgcggcggccgcgcgcggtttcgttttcgcggcaagggcgggctggcgctg
gaggtcgagctcgacaatgccaagctggtcgcgcaggtgcggcgttgtcagcagttgcct
gggcaggcgctgttccagtaccgcgacgacgacggccgtctgcaaccggtggattccggc
gcggtcaacgcctacctgcacgaggccatgggcgcggactttaccgccaaggacttccgc
acctggggcggcacgttggcggcgttccggcgcctggccgaactgccgttgccggagccc
tcgcgcagcggcaagcctagtgagcgcgcgctgctgctcgcgcagaacgcggtgatcggc
gaagtcgcacaggcgctgcgcaatacgccgagcgtctgccgcaaggcctacatcgatccg
gcggtgttcagcggttggcgcgaaggccgattgtcgcgttacgccgacggcgcgcgcagc
gagttgcagtgggaaagcgcggcgctgcggttcctcaagcaggcgcgcaagcacgccggc
tga
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