Lucilia cuprina (Australian sheep blowfly): 111684233
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Entry
111684233 CDS
T06013
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lcq
Lucilia cuprina (Australian sheep blowfly)
Brite
KEGG Orthology (KO) [BR:
lcq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcq03016
]
111684233
Enzymes [BR:
lcq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111684233
Transfer RNA biogenesis [BR:
lcq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111684233
Prokaryotic type
tRNA splicing ligases
111684233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
111684233
NCBI-ProteinID:
XP_046811903
EnsemblRapid:
LOC111684233
LinkDB
All DBs
Position
Unknown
AA seq
400 aa
AA seq
DB search
MVVRPYNEELKYLEKISDCCWRIKKGFQPNMNVEGCFYVNDNLEKLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMDDPLSIVSPGGVGFD
INCGVRLLRTNLYEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNANDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWSASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN
SPEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFHTTPDDLDMHVIYDVSHNIAKVE
NHIVDGKEKKLLVHRKGSTRAFPPNHPLIPVDYQLTGQPV
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcagaccctataacgaggagctaaaatatttggaaaaaatcagcgattgctgt
tggcgcattaagaagggcttccagcccaatatgaatgtagaaggatgtttctacgtaaac
gataatttggagaagctaatgctggaagagttaaagaattcctgtagacctggagctgtg
ggtggctttttgccgggtgttaaacaaattgccaatgtagcagcattacccggcattgtg
ggacgttccatcggtttgcccgatatacattccggttatggttttgctattggtaatatg
gccgcctttgatatggatgatcctttgtctattgttagtcctggtggtgtgggtttcgat
attaactgtggtgtacgtttgttgagaaccaatctgtatgagaaagatgtacagcctgtg
aaagagcaattggcccaaagtttattcgatcatatcccagtaggtgtaggctctaagggt
attatacctatgaatgccaatgatttggaagaggctttggaaatgggcatggattggagt
ttaagagaaggctatgtttgggctgaagataaagaacattgcgaagaatatggtcgtatg
ttgaatgccgatccctctaaagttagtttacgcgccaagaaaagaggtttaccccagttg
ggtactttgggtgctggtaatcattatgccgaaattcaagtagtagatgaaatttatgac
aaatggagtgcctctaaaatgggtatcgaagagaagggtcaggtatgtgttatgatacac
tcgggctccagaggttttggccatcaagtggccaccgatgctttggtacaaatggaaaag
gccatgaaacgtgataatatcgaaaccaatgataggcaattggcctgtgcacgcattaac
tcacccgaaggtcaggattatcttaaagccatggcggccgctgccaattttgcttgggtt
aatcgcagttccatgacattccttacccgccaggcttttgctaaaatgttccacacaaca
cccgatgatcttgatatgcatgttatctatgatgtctcacacaatatagcaaaagtggaa
aatcacattgtcgatggcaaagagaaaaaattgctagtacatcgtaaaggttccactaga
gctttcccccctaatcatcctttgataccagtcgattatcaattaaccggacaacctgta
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