Leucobacter denitrificans: H9L06_00585
Help
Entry
H9L06_00585 CDS
T06817
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ldn
Leucobacter denitrificans
Pathway
ldn03030
DNA replication
ldn03410
Base excision repair
ldn03420
Nucleotide excision repair
ldn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ldn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L06_00585 (ligA)
03410 Base excision repair
H9L06_00585 (ligA)
03420 Nucleotide excision repair
H9L06_00585 (ligA)
03430 Mismatch repair
H9L06_00585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ldn03032
]
H9L06_00585 (ligA)
03400 DNA repair and recombination proteins [BR:
ldn03400
]
H9L06_00585 (ligA)
Enzymes [BR:
ldn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L06_00585 (ligA)
DNA replication proteins [BR:
ldn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L06_00585 (ligA)
DNA repair and recombination proteins [BR:
ldn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L06_00585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L06_00585 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L06_00585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L06_00585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
RNA_lig_T4_1
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
QNN62925
UniProt:
A0A7G9S500
LinkDB
All DBs
Position
125971..128178
Genome browser
AA seq
735 aa
AA seq
DB search
MTESSENFSDFERAREESERLTAEIERYRLAYHSEGVSLVSDAEYDALFRRLEAIEREHP
ELAGQDSPTQEVGAAVVSAGFPEHEHAERMLSLDNVFSIDEFREWAEKTKASVGTDVRWL
SELKIDGLAINLAYRDGKLETATTRGDGRVGEDITENVQFIPVIPTSLNGDDIPEFFEAR
GEVFLCTEDFEALNERQHELQAAHAEAQRARGVAEENITVKYPEFANARNTAAGSLRQRA
EKKNDADLALMRSRLGRLSMYMHGIGAWDSPAFSNQSDAYDLLKSWGLPVSPHSRVFDTV
DEVVQFIEDCGERRHDFEHEIDGIVVKVNDLSMHDELGVTSRAPRWAIAYKYPPEEVHTK
LLDIRIGVGRTGRATPYAVMEPVHVAGSTVSQATLHNQDVVRAKGVMIGDTVVLRKAGDV
IPEILGAVIERRDGSEREWIMPDHCPECGTELRAMKEGDIDLRCPNARACPAQVRGRVEH
IGSRGGLDIEVLGEVTAAALTQPQGDDEPLLVTEAGLFSLTEDLLLRHPYFRRKDGSASK
DAETFIAELDKAKTKPLWRLLVALNIRHVGPVAARALAEWFGSLEAIRAASVEELSEVEG
VGGIIAESLSEWFTVDWHVEIVDQWATAGVQWSTPGHPGPGAARSVDGVLAGLTVVATGT
LEGFTRDGAKEAIIQAGGKAASSVSKKTDYVAAGPGAGSKLTKAEELGIPVLNAEQFAVL
VTQGPSGLRELSTDE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaatcatctgagaacttcagcgatttcgaacgagcgcgcgaagagtccgaacgc
ctcacagcagagatcgagcgataccgcctcgcctaccactctgagggcgtcagcctcgtc
tcagatgccgagtacgacgcgctatttcggcggcttgaggcgatcgagcgcgaacatcca
gagctagcaggccaagacagcccgactcaggaggtcggtgctgcagtcgtctcagcgggg
tttccagagcacgaacacgcggagcgaatgctcagtctcgataacgtgttttcgattgac
gagtttcgcgaatgggctgaaaagacgaaagcatctgtcggcactgatgttcgttggctc
tccgagctcaagatagatgggctcgcaatcaatcttgcttaccgagatggaaaacttgag
accgcaaccacccgcggcgacgggcgggtcggcgaggacatcacggagaatgtgcagttc
atcccggtgattccaaccagtctcaacggggatgatattccagagttctttgaggctcga
ggagaggtgtttctttgcaccgaagactttgaggcgttgaatgagcggcagcacgaatta
caggctgcgcacgcggaggctcagcgcgcgcgaggagtagccgaagaaaacatcactgtg
aagtatcccgagtttgcgaatgcccgcaatactgccgccggaagtttgcggcagcgggct
gagaagaaaaacgacgcagaccttgcgcttatgcggtctagactcggcagactctcgatg
tacatgcacggtatcggcgcgtgggattccccggcgttttccaaccaatcagatgcgtat
gaccttctgaagtcttggggccttcctgtgtcgccgcactctcgcgtattcgatacggtc
gacgaggtggtgcaatttatcgaagactgcggcgagcgccgtcatgatttcgagcatgag
atcgatggaatcgtggtgaaggttaacgatctatcgatgcacgatgagctgggggtgact
agccgggcaccgcgttgggcgattgcttacaagtaccctccagaagaggttcacacgaaa
ctgctcgatattcgaatcggtgttgggcgtactggtcgggcgacaccttatgcggtcatg
gagccagtgcacgttgcggggtcaacggtgagccaggcaacacttcacaatcaagacgtc
gttcgtgcaaagggcgtaatgatcggcgacaccgtcgtgcttcgcaaggcgggcgacgtt
atccccgagattctcggtgcggtcatcgagcggcgtgacggcagcgaacgtgagtggatc
atgccagatcactgccccgagtgtggcactgagctgcgtgcgatgaaagagggcgacatc
gacctccggtgcccgaatgctcgtgcgtgccccgctcaggttcgggggcgcgtcgagcac
attggttcgcgtggcggcctcgatatcgaagtgctcggggaggtgacggctgccgcgtta
acgcagccacagggggatgatgagccactgcttgttacagaggcggggctattctctctc
accgaggatctgctcctgcgtcatccctactttcggagaaaggatgggagcgcgtctaag
gatgcggagacctttattgccgagctcgataaggcaaagacgaagccgctgtggcgactg
ctggtcgccctgaatattcgccatgtgggtcccgttgccgcccgggcactcgccgaatgg
tttggctcgcttgaagccatacgtgcggcgagtgtcgaggagctttctgaggttgagggg
gtcggcggcatcatcgccgagtcgctctcagagtggtttacggtcgattggcacgtcgaa
attgtggatcagtgggcgaccgccggcgtgcaatggtcgaccccgggtcacccaggccct
ggggcagcgcgatctgttgatggcgtgttggcgggcctcaccgtggtggccacgggaacg
cttgagggattcacgcgtgatggggccaaggaagcgatcattcaggcgggcggaaaggcc
gcatcgagcgtgtctaagaagacggattacgttgcagcgggtccgggtgcaggatcgaag
ctgacgaaggcagaggaacttggtattcccgtgctgaacgccgaacagtttgctgttctc
gtgactcagggaccgagcggtttgcgggagttatccacagatgagtga
DBGET
integrated database retrieval system
