Lentzea guizhouensis: BBK82_33360
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Entry
BBK82_33360 CDS
T04448
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
led
Lentzea guizhouensis
Pathway
led03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
led00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBK82_33360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
led03400
]
BBK82_33360
Enzymes [BR:
led01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBK82_33360
DNA repair and recombination proteins [BR:
led03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBK82_33360
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ANZ43219
UniProt:
A0A1B2HZP8
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All DBs
Position
complement(6884104..6885015)
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AA seq
303 aa
AA seq
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MVTSRVTVRAGARTLALSNLDKVLYPDGTAKSEVIAYYSRIAPVLLPHLRDRPVTFVRFP
DGVGGQRFFQKNADASAPAWLPTVSLKGGGSRRGADEVVRYPLIHELAALAWAANLAAIE
LHVPQWTVSGDGARNLPDRLVFDLDPGPGTTVVDCCRIAERLHDVLVADGLEPVATTSGS
KGMQVYAGIDVASARSPSAYAKALAVAFEREAPGLVTATMSKARREGRVFIDWSQNNPAK
TTIAPYSLRGRDSPTVATPVTWDEVRGCRRVEQLTFTADDVLDRVPALGDLFAPAAVSRA
PLP
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggtcaccagccgggtgacggtcagggcgggcgcccgcacgctggcactgtccaacctg
gacaaggtgctgtacccggacggcaccgccaagagcgaggtcatcgcctactacagccgg
atcgcgcccgtgctgctgccgcacctgcgggaccggccggtcacgttcgtccggttcccc
gacggggtgggcggccagcggttcttccagaagaacgccgacgccagcgctcctgcctgg
ttgccgacggtgtcgctgaagggcggcggttcgcggcgcggcgccgacgaggtcgtgagg
tacccgttgatccacgagctcgccgcgctggcgtgggcggccaatctcgcggcgatcgag
ctccacgttccacagtggaccgtgagcggggacggcgccaggaacctgccggaccgcctg
gtgttcgacctggaccccggtcccggcacgacggtcgtcgactgctgccggatcgcggaa
cggcttcacgacgtcctggtcgcggacgggctggagccggtcgcgacgacctccggttcg
aaggggatgcaggtctacgcgggcatcgacgtggcgagcgcccggtccccgtcggcgtac
gcgaaggcgctcgcggtggccttcgaacgcgaggcccccggcctggtgaccgcgacgatg
agcaaggcgcgccgcgagggcagggtcttcatcgactggagccagaacaacccggccaag
accaccatcgcgccctactccctgcgcggcagggactcaccgaccgtcgccaccccggtc
acctgggacgaggtccgcgggtgccgccgggtggagcagctgacgttcaccgcggacgac
gtgctcgaccgcgttccggcgctcggtgacctcttcgcgcccgccgccgtgagccgggca
ccgctcccctga
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