Leclercia sp. W17: DVA44_02850
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Entry
DVA44_02850 CDS
T05987
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lee
Leclercia sp. W17
Pathway
lee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVA44_02850 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lee03019
]
DVA44_02850 (pnp)
03016 Transfer RNA biogenesis [BR:
lee03016
]
DVA44_02850 (pnp)
Enzymes [BR:
lee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DVA44_02850 (pnp)
Messenger RNA biogenesis [BR:
lee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DVA44_02850 (pnp)
Transfer RNA biogenesis [BR:
lee03016
]
Prokaryotic type
tRNA degradation factors
DVA44_02850 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
aRib
KH_2
DUF2110
Motif
Other DBs
NCBI-ProteinID:
AXF63150
UniProt:
A0A345C5U5
LinkDB
All DBs
Position
561866..563998
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AA seq
710 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAAND
ALNARVAALAEARLSDAYRITDKQERYTQVDAIKSETIATLVAEDESLDANELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDADK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQA
INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKYAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSSAAAPEAPAGEQGE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgttcgtaaattccagtacggtcaacataccgttacgctggaaacc
ggcatgatggcacgtcaggctactgctgctgttatggtaagcatggatgacaccgcggta
ttcgtaaccgtggttggccagaaaaaagctaaaccaggtcaggacttcttcccactgacc
gtaaactaccaggagcgtacttacgctgccggtaaaatcccgggtggtttcttccgtcgt
gaaggccgtccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgcccggttcgt
ccgctcttcccggaaggcttcgttaacgaagttcaggttatcgcgaccgttgtttccgtt
aacccacaggttaacccggacatcgttgcgatgatcggcgcatccgcagccctctccctg
tctggtattccattcaacggtcctatcggtgctgcgcgcgtgggttacatcaatgaccag
tacgttctgaacccaactcaggatgagctgaagtcaagcaagctggacctggttgttgcc
ggtaccgaagctgcggtactgatggttgaatccgaagcagaactgctgagcgaagaccag
atgctgggcgcggtggtctttggccacgatcagcagcagatcgttatccagaacatcaac
gacctggtgaaagaagccggtaaacctcgttgggactggcagccagaagcggcaaacgac
gcgctgaatgcacgcgttgcagccctggccgaagcgcgtctgagcgatgcttaccgcatc
accgacaagcaagagcgttatacccaggttgacgcgatcaaatctgaaaccatcgctacg
ctggtggcagaagatgagtccctggacgctaacgagctcggcgaaatcctgcacgctatc
gagaaaaacgttgttcgtagccgcgttctggcaggcgagccgcgtatcgatggccgtgaa
aaagatatgatccgtggtctggatgtgcgtactggcgtactgccacgtactcacggttcc
gcgctgttcacccgtggtgaaacgcaggcgctggttaccgcaaccctgggtactgcccgt
gacgcacagaacatcgacgaactgatgggcgagcgcactgacagcttcctgttccactac
aacttccctccgtactccgtaggtgaaaccggtatggttggctcgccgaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgcggcgtactggctgtgatgccagatgctgataaa
ttcccgtacaccgttcgtgtggtttctgaaatcaccgaatctaacggttcttcttctatg
gcttccgtgtgcggtgcttctctggcactgatggatgcgggcgtaccggtgaaagcggcc
gttgcgggtatcgcaatgggtctggtgaaagaaggcgacaacttcgttgttctgtctgac
atcctgggcgacgaagatcacttgggtgacatggacttcaaagtcgcgggttcccgcgaa
ggtatctctgccctgcagatggatatcaaaattgaaggcatcaccaaagagatcatgcag
gttgcgctgaaccaggctaaaggtgcacgtctgcacatcctgagcgtgatggaacaggcg
atcaacgcgccacgtggcgacatttctcagttcgctccacgtatccacaccattaagatc
agcccggacaagatcaaagatgttatcggtaaaggcggttctgttatccgtgctctgacc
gaagagactggcactaccatcgaaatcgaagatgacggtactgtgaagatcgcagcgacc
gacggcgagaaagcgaaatacgctatccgtcgtatcgaagagatcactgccgagatcgaa
gtgggccgtgtctacaatggtaaagtgacccgtatcgttgactttggcgcattcgttgcc
atcggtggcggtaaagaaggtctggtacacatctctcagatcgctgacaagcgcgttgag
aaagtgaccgactacctgcagatgggtcaggaagtgccggttaaagttctcgaagttgac
cgtcagggccgtatccgtctgagcattaaagaagcgaccgagcagtcgtctgccgctgcg
ccggaagctccggctggcgaacagggcgagtaa
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