Leclercia sp. LSNIH3: C3F35_16255
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Entry
C3F35_16255 CDS
T05316
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
leh
Leclercia sp. LSNIH3
Pathway
leh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C3F35_16255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leh03400
]
C3F35_16255
Enzymes [BR:
leh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C3F35_16255
DNA repair and recombination proteins [BR:
leh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C3F35_16255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AUY40215
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All DBs
Position
3335111..3338656
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AA seq
1181 aa
AA seq
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MTDTAESLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFSRPLSVEELL
VVTFTEAATEELRGRIRANIHELRIACLRQSTDNPLYASLLDEIEDTQQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRDIA
EAVHGLWKGPEELLRSIDRYLQGEAPVIKSPPPADETLASRHEKIVGLIATMKQQWSSSV
AEIDAVIERSGIDRRKFNRGNQAKYIERVTAWAQEEKHSYQLPDALEKFSQTFLAERTKA
GGEVPQHPLFAAIDTLLAEPLTLNDLMITRALAEIRAAVAREKRRRGELGFDDMLSRLDE
ALNSDNGDALAAAIRGRFPVAMIDEFQDTDPQQYRIFRRIWRQQPDTALLLIGDPKQAIY
AFRGADIFTYMKARGEVAAHYTLDTNWRSAPGMVESVNTLFSQMNDAFMFREIPFLPVKS
APKNAGLRFELRGDFQPAMNVWLMEGEGCGVGDYQAFMAQHCAAQIRDWLSAGVRGEAIL
HRGDEARPVRASDITVLVRSRQEAALVRDALTLLTIPSVYLSNRDSVFETLEAQEMLWLL
QAVLAPERESILRSALASSMLGLTARDIDMLNNSETLWDEAVEEFTHYRERWQKRGVMAM
LRDIMTQRNIAENMLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLAQHIAEPNS
NASSQQMRLESDKHLVKIVTIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRKTFEAVLDL
SKAEDSVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGDKSGDSDFHLSALGR
LIQRGEPKDAAGLRQCLETLCTGPLALQIAGVADTARWNMPESTMPDLQARQVARVLFDD
WRVTSYSGLQQRGHSIAQDLMPRLDIDAAGTGQVVQEPELTPHQFPRGASPGTFLHGLFE
ALDFTQPVSPEWVLEMLQKGGYDARWQPVLTQWITQVLQTPLNEEGVSLSQLSATDKQVE
MEFYLPVAGPLTADALDALIREYDPLSRDCPPLDFRQVRGMLKGFIDLVFRHNGRYYLLD
YKSNWLGENGEAYTPEAMARAMQSHRYDLQYQLYTLALHRYLRHRIADYDYQRHFGGVIY
LFLRGVDGSSPGAGCFTTRPDEMLINQMDSLFSASREELVS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataccgccgagtcccttgatcccctacgtttaccgttacagggggagcgactg
atagaggcctcagcgggaaccggaaaaaccttcaccattgcggcactctatctgcgtctg
ctgctcggactgggcggcagcgcagccttcagccgcccgctcagcgtagaagagcttttg
gtggtgaccttcaccgaagccgcaacggaagaactacgcggccgtatccgcgctaacatt
cacgaattgcggattgcctgcctcagacagagcacagataacccgctatatgccagcctg
ctggacgagatcgaagatacccagcaggcggcgcagtggctgctgctggcggaacgccag
atggacgaggccgccgtgttcaccatccacggcttctgtcagcggatgctcagcctgaac
gcctttgaatccggcatgctctttgagcaacaactgatcgaagatgaatccctgttgcgc
taccaggcgtgcgccgatttctggcgtcgtcactgctaccccttgccacgtgatattgcc
gaagcggttcatggtttatggaaagggccggaagagttactccgctccatcgatcgttat
ctgcagggcgaggccccggtcattaaatcccctccgcctgcggacgaaacgctggcctcc
cgccatgagaagatcgtcggcttaattgccaccatgaagcagcagtggtccagcagcgtg
gcggaaatcgacgcggttattgaacgttcgggtatcgaccggcgcaagttcaaccgcggc
aaccaggcaaaatacatcgagcgtgtgacggcctgggctcaggaggagaagcacagctat
caactgcctgacgcgctggaaaagttctcgcaaacgtttcttgcggagcggacaaaagcg
ggcggcgaagtgccgcagcaccctctgtttgccgccatcgacactctgctggctgagccg
ctgaccctgaacgatctgatgatcactcgtgcgctggcagagatccgcgccgcagtggcg
cgggaaaagcgccgtcgtggcgagctgggctttgacgatatgctcagtcgtctcgatgag
gccctgaacagtgacaatggtgatgcgctggctgcggctattcgtggccgtttcccggtg
gcgatgatcgatgaatttcaggataccgacccccagcagtaccggattttccgccggatc
tggcgtcagcagccagacactgccctgctactgattggtgacccgaaacaggcgatctat
gcgttccgtggggcagatatctttacctatatgaaagcgcgtggcgaagtcgctgcgcac
tatacgctggataccaactggcgctcagcgcccggaatggtagaaagcgtgaataccctc
ttttcacaaatgaacgacgccttcatgttccgtgaaatcccgttcctgccggtcaaatcg
gcccctaaaaatgccgggctgcgctttgagctgcgaggtgattttcagccagcgatgaac
gtctggctgatggagggcgagggatgtggcgtcggagattatcaggcctttatggcccag
cactgcgcggcacaaatccgcgactggctgagtgcgggtgttcgcggtgaagccatcctg
catcggggtgacgaggctcgtccggttagagcctcggacatcacggtgctggtgcgcagt
cgtcaggaagcggcgctggttcgcgatgcgctgacgctgctgaccatcccttcggtctat
ctttccaaccgcgacagcgtgtttgaaacgctcgaagcccaggagatgctctggctgctg
caggcggtgctggcacccgagcgtgaaagcatcctgcgcagcgcgctggcaagttccatg
ctcgggcttaccgctcgcgacatcgacatgctgaataacagtgaaaccctctgggatgag
gcggtagaagagtttacccactaccgcgaacgctggcagaagcggggcgtgatggcgatg
ctgcgcgacatcatgacgcagcgcaatattgcggaaaatatgctggccaccgccggcggc
gaacgccgtctgaccgatattttgcacatcagcgagttgctccaggaggcgggaacgcag
ctggagagcgagcacgccctggtgcgttggctggcgcagcatatcgccgaacccaacagc
aatgcctccagccagcagatgcgcctcgaaagcgataaacatctggtaaaaattgtcacc
attcacaaatcgaaaggactggaatacccgctggtctggctgccctttattgccaactat
cgggtgcaggatcaggccttttaccacgatcgcaaaacctttgaagccgtgctcgatctc
agcaaggcggaggacagcgttgagctggccgaagccgagcggctggcggaagatttgcgc
ctgctatatgtggcattaacccgctcggtctggcattgcagtctgggcgtcgcgccgctg
tttcgtcgtcgtggcgacaagtctggtgacagcgatttccacctcagtgcgctgggtcgc
ctgatccagcgcggtgagccgaaagatgccgccgggctgcgccagtgcctggaaaccctg
tgcactggccctcttgcgctgcagattgccggggtggccgataccgcccgctggaacatg
ccggagtcaacaatgccggatctgcaggcgcggcaggtggctcgcgtactgttcgatgac
tggcgagtgaccagttattccgggctgcaacagcgcgggcacagtatcgcccaggatttg
atgccgcggctcgacatcgatgccgcaggcactggccaagtcgtacaagagccggagctg
acgccacatcagttcccgcgcggtgcctcgccgggcacctttttacacggcctgtttgaa
gcgctcgattttacccaacccgtctcgccggagtgggtactggagatgttgcagaaaggc
ggctatgacgcccgctggcagccggtgttaacccagtggatcacccaggttctgcagaca
ccgctcaatgaagaaggggtctcgctgagccagctatcagccaccgataaacaggttgag
atggagttttacctgccggttgccgggccgcttaccgccgatgcgctggatgcattgatc
cgcgagtacgatccgctgtcacgcgactgcccgccgctcgatttccgccaggtgcgcggt
atgctgaaaggctttatcgacctggtgtttcgccataatggccgttactacctgctggac
tataagtccaactggctgggcgaaaatggcgaggcctataccccggaggcgatggcgcgc
gcgatgcagtcccaccgctacgatctgcaatatcagctctacacgctggcgctacaccgt
tatctgcgccaccgtatcgctgattatgactatcagcggcatttcggcggtgtgatctac
ctgtttttacgcggagtggacggcagctcgccgggggccggttgctttaccacccgcccg
gatgaaatgttaataaatcaaatggatagcttgttttctgcaagccgagaggagcttgtg
tcatga
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