KEGG   Leclercia sp. LSNIH1: C2U54_05925
Entry
C2U54_05925       CDS       T05297                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lei  Leclercia sp. LSNIH1
Pathway
lei03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lei00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C2U54_05925 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lei03021]
    C2U54_05925 (rpoB)
   03400 DNA repair and recombination proteins [BR:lei03400]
    C2U54_05925 (rpoB)
Enzymes [BR:lei01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     C2U54_05925 (rpoB)
Transcription machinery [BR:lei03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     C2U54_05925 (rpoB)
DNA repair and recombination proteins [BR:lei03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      C2U54_05925 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AUU83576
LinkDB
Position
1157063..1161091
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGDTASFDIEANGKVYVEKGRRITARHIRQLEKDEIKHIEVPVEYIAGKVAAKD
YVDASTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETVRVDPTTDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDTIEGSGIL
SKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANTNLDEEGRFVDDLVTCRSKGESSLFSNDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFGRIYAVLVSGGVEAEKLDKLPRDRWLELGLADEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGTDVCQKVDLNTFSDEEVMRLAENLRKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggacattccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaagggcagtacggcctggaagcagccttccgttccgtattcccgattaag
agctacagcggtaactccgagctgcaatacgtcagctaccgccttggcgaaccggtattt
gacgttcaggaatgtcaaatccgtggcgtgacctactcggcaccgctgcgcgttaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtactttcgttatcaacggt
actgagcgtgttatcgtttcccagctgcaccgtagcccgggcgtcttcttcgacagcgat
aaaggtaaaacgcactcttccggtaaagtactgtataacgcgcgtatcattccttaccgt
ggttcctggctggacttcgagttcgatccgaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaaactgcctgcgaccatcattctgcgtgcgctgaactacaccactgagcagatt
cttgatctgttctttgagaaagttgtctttgaaattcgcgacaacaagctgcaaatggaa
ctggtgccagagcgtctgcgtggtgataccgcgtcgttcgacatcgaagccaacggcaaa
gtgtatgtggaaaaaggccgccgtattactgcgcgccacatccgtcagctggaaaaagat
gaaatcaaacacatcgaagttccggttgagtacattgctggcaaagttgcagcaaaagac
tacgttgatgcatctactggcgagctgatctgcccagcgaacatggagctgagcctggat
ctgctggctaagctgagccagtctggccacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggtccgtacatgtccgaaaccgtacgtgtcgacccaaccaccgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccaccaactcgcgaagcg
gctgaaagcctgttcgagaacctgttcttctccgaagaccgctacgatctctccgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgtgacacgatcgaaggttccggtatcctg
agcaaagaagacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatctccgca
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagatcacgcacaagcgtcgtatctctgcactcggcccaggcggtctgacccgt
gagcgcgcaggcttcgaagttcgagacgtacacccgacccactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
acgaacgaatacggcttcctcgagaccccgtaccgtaaagtgactgacggtgttgtaacc
gacgaaattcactacctgtctgctatcgaagaaggtaactacgttatcgcccaggcgaac
accaacctggacgaagaaggtcgctttgttgatgacctcgttacctgccgtagcaaaggt
gaatccagcttgttcagcaacgaccaggttgactacatggacgtttccacccagcaggtg
gtttccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaactgcagttgctaaacgt
ggcggtaccgttcagtacgtggatgcatcccgtatcgttatcaaagttaacgaagacgag
atgtacccaggcgaagcgggtatcgacatctacaacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccttgcgtatctctgggtgagccagttgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtctccgag
cgtgtggttcaggaagatcgtttcaccactattcacatccaggaactggcctgtgtctcc
cgtgacaccaagctggggccagaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacatcggtgcggaagtgaccggcggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccgaacggtgtttccggtacggttatcgacgtacaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggctaagaaagacctg
tctgaagagctgcagatccttgaagctggcctgtttggtcgtatctacgcggtgctggtt
tccggtggtgttgaagctgagaagctcgacaagctgccgcgtgaccgctggctggaactg
ggcctggccgacgaagagaaacaaaatcagctggaacagctggctgagcagtatgacgaa
ctgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtttatctggccgttaaacgtcagatc
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaaccca
ctgggcgtaccgtctcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcgaaaggtatcggcgacaagattaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcgtacgatctgggtaccgacgtttgccagaaagtcgac
ctgaacaccttcagcgatgaagaagtgatgcgtctggctgaaaacctgcgtaagggtatg
ccaatcgcaacgcctgtcttcgatggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccaagttctggccagatcactctgttcgacggtcgtaccggtgagcag
ttcgagcgccaggtaaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcacgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgcttgaagca
tatggcgcagcatacaccctacaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggagccgggcatgcca
gagtccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgaactggaa
gacgagtaa

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