KEGG   Leucobacter sp. DSM 101948: Leucomu_09585Help
Entry
Leucomu_09585     CDS       T05802                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
leu  Leucobacter sp. DSM 101948
Pathway
leu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:leu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Leucomu_09585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:leu03400]
    Leucomu_09585
Enzymes [BR:leu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Leucomu_09585
DNA repair and recombination proteins [BR:leu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Leucomu_09585
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: QAB18137
LinkDB All DBs
Position
2037658..2040213
Genome map
AA seq 851 aa AA seqDB search
MARREQTVEVGGRRIRVSNLEKVLYPSTGTTKGDVIGYYSAIAPTMLPHCRDRPATRKRW
PDGVGDDGRGDFFFQKDIGDSAPDWVRTGRIQHKDHVNHYPLVDDEATLVWLAQLAALEI
HVPQWRFDASGEPGNPDRLVFDLDPGEGVTLRECAQVAFLVRDILRDMGLPSIPVTSGSK
GIHLYAALDGSQTSDQASAVARELARSLEADHPDDITSSMKRALRPGHVFIDWSQNNASK
TTVAPYSLRGRIAPTVAAPRSWRELASPHLQQLEFREVLQRVAKRGDPLAELTELSAAHA
VSDRLSLYRSKRDAARTPEPVPPAGAPRDAGSAPGNRAGSRSGNADADAEGERRGGPVFV
IQRHEARRLHFDFRLEHDGVLVSWALPKGVPTDPALNHLAVPTEDHPMSYRHFEGVIPKG
EYGAGNVEIWDAGTYELEKWRDDEVIVRLTGRPGGGLGGPRRYALFRAGEADGKPRWMIH
LMSDDAAAAARAGALRGGERGRGAGRANRRPSARDRAAADPDPVAPVPDPDLRPMLSERG
SPAEFERLDEQEWAFEMKWDGIRALAFVDGERCALRSRSGGDLTAAYPEFAALPAVVNGD
RAVLDGEIIAFGTNGAPSFSRLQRRFGLTDRAEVERARREAPASYLVFDVLSVNGRDCRT
LPYRQRRELLDALVEPMPGVPAALPEVFAGSARDAAAASLRLHLEGVMAKRWTSRYRSGV
RSSDWRKFPLILAEEAVVIGWRDSPSDSQGFASLLLADWQDGAWRYAGRVGTGFSSAERR
TIRIRLAPLEHAEPAAEVPAEISRDAHWVRPELVGEVVSKGRTAGGSFRQAVWRGWRPDK
RPADLMTGARG
NT seq 2556 nt NT seq  +upstreamnt  +downstreamnt
atggcccgcagagagcagacggtcgaggtgggcgggcgccgcatccgggtctcgaatctg
gagaaggtgctctacccctccaccggaaccaccaagggagacgtgatcggctactacagc
gcgatcgctccgacgatgctgccgcactgccgcgaccgcccggcgacgcgcaagcgctgg
cccgacggggtgggcgacgacggccgcggcgacttcttcttccagaaggacatcggcgat
tccgcgcccgactgggtgcgcacgggccgtatccagcacaaggatcacgtgaaccactac
ccgctcgtcgacgacgaggcgacgctcgtgtggctcgcccagctcgccgcgctcgagatc
cacgtgccgcagtggcgcttcgacgcctcgggcgagccggggaatccggatcgcctcgtg
ttcgacctcgaccccggcgagggcgtgacgctgcgcgagtgcgcgcaggtcgcattcctg
gtgcgcgacatcctgcgcgacatggggctgccgtcgatcccggtgacgagcggcagcaag
ggcatccacctctacgccgcgctcgacggttcgcagacctccgaccaggcgtcggcggtt
gcccgcgagctggctcgctcgctcgaggccgaccaccccgacgacatcacgagctcgatg
aagcgggccctgcgccccggtcacgtgttcatcgactggagccagaacaacgcgtcgaag
accacggtcgccccgtactcgctgaggggcaggatcgcgcccaccgtggcggcgccgcgc
tcctggcgcgagctcgcgtcgccgcacctgcagcagctcgagttccgggaggtgctgcag
cgggtcgcgaagcggggcgacccgctcgccgaacttacggagttatcggccgcgcacgcg
gtgtcggatcgcctgagcctctaccggtcgaagcgcgatgcggcgcgcaccccggagccg
gtgcccccggcgggagcgccgcgcgacgccggctccgcccccgggaaccgcgccggctcc
cgctccggcaacgccgacgccgacgcggagggcgagcggcggggcggccccgtcttcgtg
atccagcgccatgaggcacgacggctgcacttcgacttccggctcgagcacgacggcgtg
ctcgtcagctgggcgctgccgaagggcgtgccgaccgaccccgcgctcaatcacctcgcg
gtacccaccgaggatcacccgatgtcgtaccgccacttcgagggggtcatcccgaagggc
gagtacggagccgggaacgtcgagatctgggacgccggcacctacgagctcgagaagtgg
cgcgacgacgaggtgatcgtgcggctcaccggccgcccgggcggcggtctcggcggcccg
cggcgctacgcgctgttccgggcgggcgaggccgacgggaagccgcggtggatgatccac
ctgatgagcgacgacgcggcggcggctgcgcgagcaggggcgcttcgcggaggcgagcgg
ggtcggggcgcgggtcgcgcgaaccgtcggccgtcggcgcgggatcgggctgcagcggat
ccggatcccgtcgccccggtgcccgatcccgatctgcggccgatgctctccgagcgcggc
tcccccgccgagttcgagcgcctcgacgagcaggagtgggcgttcgagatgaagtgggac
ggcatccgagcgctcgctttcgtcgacggcgagcgctgcgccctccgcagccgctcgggc
ggcgatctcacggccgcgtacccggagttcgccgcgctccccgcggtcgtgaacggcgat
cgagcggtgctcgacggcgagatcatcgcgttcggcacgaacggggcgccgagtttcagc
cggctgcagcgccgtttcgggctgaccgaccgtgccgaggtcgagcgggcccgccgcgag
gcacccgcctcgtacctcgtgttcgacgtgctgagcgtcaacggtcgggattgccgcacg
ctcccctaccggcagcgccgagagctgctcgacgccctcgtcgaaccgatgcccggggtg
ccggcggcgctgcccgaggtgttcgccgggtctgcgcgcgacgccgccgccgcgagtctc
cgcctgcatctggagggggtcatggcgaagcgctggacgagcaggtaccgctcgggagtg
cgctcgtcggactggcgcaagttcccgctgatcctcgcggaggaggcggtcgtgatcggc
tggcgcgacagcccgtcggactcgcagggcttcgcgtcgctgctgctcgcggactggcag
gacggagcctggcgctatgcgggccgcgtgggcaccggcttctcctcggccgagcgccgc
acgatccgcatccgcctcgccccgctcgagcacgcagagcccgcggccgaggtgcccgcc
gagatcagtcgcgacgcgcactgggtgcggcccgaactcgtgggcgaggtcgtctcgaag
ggacgcacggcgggcggcagcttccggcaggcggtgtggcgcggctggcggcccgacaag
cgtccggccgatctcatgacgggcgctcgcggatga

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