Leptospirillum ferrooxidans: LFE_1220
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Entry
LFE_1220 CDS
T01809
Name
(GenBank) putative RecJ exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lfc
Leptospirillum ferrooxidans
Pathway
lfc03410
Base excision repair
lfc03430
Mismatch repair
lfc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LFE_1220
03430 Mismatch repair
LFE_1220
03440 Homologous recombination
LFE_1220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfc03400
]
LFE_1220
DNA repair and recombination proteins [BR:
lfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LFE_1220
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LFE_1220
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LFE_1220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF2193
Motif
Other DBs
NCBI-ProteinID:
BAM06905
UniProt:
I0INQ6
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All DBs
Position
complement(1243122..1244768)
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AA seq
548 aa
AA seq
DB search
MQSPRNEYDSPNGWSIPQIHDEKILSLSRELGTDPVWARMLLGRGFDGGSAKRAFTSPLP
PGEESLGDFTLAFQILCHVLETASPIAVYADLDVDGVTSATMFSRFLRRRKHPYITLLVH
RNDGHGLKRERLLALVAKGFRYLLVADMGTSDISLLEEMKSLGLTTIVVDHHLLREEWPA
NLALVHPRGRSCLTAVGSLYVLLAPFFQNDEEREMAFLAGLAVLADRAPLLDGNRYFIRA
LRDQASLEAFPGIRSLLRRRLQRRVMVNDYSFLVIPAINAPGRMSDPYPAFELLMATSEV
EGERLAQIVLEINRHRQETEWSLYEEIRKVWDGCPVVFQPGWAPGIMGRIAHRLCEEFNV
SVFVGTLTKDGAVRGSLRLRGGDTLDTVLKCLEGLPIQGGGHAKAGGLGFPVEILDMVRR
KLSSQLNKKEEPSYGLNSDLEIDAFLPAYYRSTSFWEGLGALLPFGEGFQPPKLGVRNAL
IERIEDGRGRTVLCHFRWKHGLERAAIRSGLQVPHSGERVDLVMTPELVGKGDRVERHFS
ICSYRIHE
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcgccaaggaatgagtatgacagtcctaacggttggtcgattcctcaaatccat
gatgagaaaattctgtccctgtccagggaactgggaacagacccggtctgggccagaatg
cttcttggcagaggctttgacggagggtcggccaaacgtgcgtttacttcgccccttcct
cccggtgaggagtcccttggggacttcactcttgcgtttcagatcttgtgccatgtcctg
gaaacagcctctcccatagctgtctatgccgatcttgatgttgacggtgtcacctccgcc
accatgttctccagatttttaaggagaagaaaacacccctatatcacacttctggtccac
agaaatgacggtcatggcttgaagcgggaacgtcttctcgcccttgtcgcaaaagggttc
cgttacctgctggtagcggatatgggaacctccgatatttccctgttggaggaaatgaaa
tcgctcgggctcacgaccatcgttgtggatcatcatttgctcagggaagagtggcctgcc
aatcttgcacttgtccatccacgcggccgttcctgtctgaccgcagtcggaagcttgtat
gtccttctggctcctttttttcagaatgatgaagaaagggaaatggcgtttctggccggc
ctcgcggtcctggccgacagggctcccctcctggacgggaaccggtattttatccgggcc
ctgagggaccaagcctctcttgaagcctttcccggaatccggtccctcctgagacgtcgt
ctccaaagacgggttatggtcaatgactactctttcctcgtcatccctgcgatcaatgct
cctggaagaatgtccgatccatatccggcattcgagcttctgatggccacatcggaggtc
gaaggagaacggcttgcgcagattgttctggaaatcaaccgccatcgccaggaaacagag
tggtccctctacgaagagattcgaaaagtatgggatggatgtccggtggtttttcagccg
ggttgggcgccaggaatcatgggtcggatcgcgcacaggctctgtgaagaattcaatgtc
tcggtctttgtcggcacattgacaaaagatggcgcagtcagaggttccctgcgtcttagg
ggaggggatacgctcgataccgttctcaaatgtctcgaaggccttcccattcagggcgga
ggccatgccaaggcaggtggtctcggttttccggtcgagattcttgatatggtcaggaga
aagctttcatcgcaattgaataaaaaagaagaaccttcatatggcctgaactcagatctt
gaaattgacgcatttcttcctgcctattatcgatccacttctttttgggagggtcttgga
gcccttctgccctttggggaaggattccagccaccgaagcttggcgtcaggaatgcattg
attgaaaggatcgaggatggaagaggaagaacagtgctgtgccattttcgctggaaacat
ggtcttgaaagggcggcgatcagaagcggtctgcaggttccccactctggagagcgtgtg
gaccttgtcatgactcctgaacttgttggaaagggggatagagtggagagacacttttcg
atctgctcttatcgcatccatgaataa
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