Limosilactobacillus fermentum F-6: LBFF_0528
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Entry
LBFF_0528 CDS
T02669
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBFF_0528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lff03019
]
LBFF_0528
Messenger RNA biogenesis [BR:
lff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBFF_0528
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
ATP-synt_B
YycC
KH_2
V-ATPase_G_2
Motif
Other DBs
NCBI-ProteinID:
AGL88437
UniProt:
A0A806IGV8
LinkDB
All DBs
Position
582804..584363
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AA seq
519 aa
AA seq
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MNAISLLIAAVAIVVGLIAGYVGRKIVFEQRLTQAKENAAGIIATAQKEAATAKKEAILE
AREESHRYREVVEQELKDRRSEVQKQEERLLQREATLDRKDTSLENRETTISARERKLDQ
KTEQIQKRQQQAADLVEQRQAELEKVAQLSHEEAKKRLLSQLKEELQSERETMIRQSEQE
AELTAEKNAKDLIVAAIQRSAADMVQETTVTVVTLPNDDMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVVLSGFDPVRREIAKMALERLIQDGRIHPARIEEAVERARKDMDTQLRE
VGEQTVFDLGLHTMHPDLIKTVGRMKYRTSYGQNVLQHSIEVAKLAGIMAAELGEDVTLA
KRAGLLHDIGKAIDHEVDGSHVELGVELTRKYKENKVVINTIASHHGDVAPTSIIAVLVQ
AADAVSGARPGARSESLEQYIQRLKKLEELANQNSGVDHSYAIQAGREIRVIVKPTKVSD
KQAVTLAHDLKQEIEKQLEYPGHIKVTVIRETRAVDYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaatcagcttattaatcgccgctgtcgctattgttgtcggtctaattgccggt
tacgtgggtaggaaaatcgttttcgaacaacgattaacccaggcgaaggaaaacgccgcg
gggattattgcaactgcccaaaaggaggcggcgacggcgaaaaaggaggccattttagag
gcccgagaagaaagccatcgctaccgggaagtcgtggaacaagaactcaaggaccgtcgt
agtgaggtccaaaaacaagaagagcgcttgctccaacgcgaagcaacccttgaccgcaag
gacaccagtctggagaaccgcgaaactacgatcagcgcccgggaacggaagctcgatcaa
aagacggagcagattcaaaagcgtcaacaacaggcagcggatttagtcgagcagcgccaa
gccgagctcgaaaaggtcgcccagctatcacacgaagaggccaaaaaacggctcctttcg
caactaaaagaagagttgcaaagtgaacgggaaacgatgattcggcaaagcgaacaagaa
gccgaattaacggcggaaaagaacgccaaggacttaatcgtggccgcaattcaacgctca
gccgcggatatggttcaagaaaccaccgtgaccgtagtaaccctccccaatgacgacatg
aaggggcggatcattgggcgcgagggccgtaacatccggaccttagaaaccctgaccggg
atcgacctgatcatcgatgacacgccggaagcagtcgtcttatccgggtttgacccggta
cggcgtgagattgccaagatggccctggagcgcttgatccaagacggccggattcacccg
gcccggattgaggaggcggttgaacgggcccgcaaggacatggatacccagctgcgtgaa
gtcggggagcaaacggtctttgacctaggcctgcacaccatgcacccggacctgattaag
acggtcgggcgaatgaagtaccggaccagttacggtcaaaacgtcttacagcactcaatt
gaagtcgccaagttagcggggatcatggccgctgagctcggtgaagacgtgaccctcgct
aagcgggccggcctcctgcacgacattggtaaggccatcgaccacgaagttgatggttcc
cacgttgaactaggggtggaactaacccgcaagtacaaggagaacaaggtcgttattaac
acgatcgcatctcaccacggcgacgtggcgccaacctcgatcattgccgtcctggttcag
gctgccgatgccgtttccggggcccgtcctggtgcccgtagtgagtcgttggaacaatat
attcaacgactcaagaagctagaggagttggccaaccaaaatagcggtgttgatcattcg
tacgctatccaggctggccgcgagattcgcgtgattgtcaaaccaaccaaggtttccgat
aagcaagcggtcaccttggcccacgacctcaagcaagagattgaaaagcaacttgaatac
ccagggcacattaaggtgacggtaattcgggaaacccgggccgtcgattatgccaagtag
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